Os02g0684400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0684400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 145.76 | 0.567 | 14.7 | 0.62 | 1.78 | 1.34 | -0.271 | -2.55 | 0.755 | 2.12 | 37.99 | 14 | -- | -- |
| 159.23 | 0.588 | 14.7 | 0.663 | 1.97 | 1.47 | -2.03 | -- | 0.718 | 1.8 | 60 | 21 | -- | -- |
| 146.04 | 0.563 | 14.7 | 0.62 | 1.78 | 1.34 | -- | -2.55 | 0.755 | 2.12 | 37.99 | 14 | -- | -- |
| 174.31 | 0.615 | 14.7 | 0.714 | 1.78 | 1.35 | -- | -- | 0.778 | 2.09 | 40 | 21 | -- | -- |
| 199.47 | 0.658 | 14.7 | 0.475 | -- | 2.17 | -- | -2.83 | 0.648 | -- | 10 | 136 | -- | -- |
| 187.19 | 0.641 | 14.8 | 0.602 | 2.72 | -- | -2.12 | -- | 0.714 | 1.36 | -- | -- | -- | -- |
| 205.52 | 0.671 | 14.8 | 0.674 | 2.72 | -- | -- | -- | 0.725 | 1.41 | -- | -- | -- | -- |
| 221.82 | 0.694 | 14.7 | 0.706 | -- | 2.2 | -- | -- | 0.815 | -- | 10 | 140 | -- | -- |
| 187.9 | 0.638 | 14.7 | -- | 1.84 | 1.27 | -- | -- | 0.713 | 2 | 40.04 | 21 | -- | -- |
| 661.22 | 1.2 | 14.7 | 0.782 | -- | -- | -- | -- | 0.783 | -- | -- | -- | -- | -- |
| 217.5 | 0.69 | 14.8 | -- | 2.73 | -- | -- | -- | 0.65 | 1.42 | -- | -- | -- | -- |
| 235.06 | 0.714 | 14.7 | -- | -- | 2.19 | -- | -- | 0.77 | -- | 10 | 138 | -- | -- |
| 677.34 | 1.21 | 14.7 | -- | -- | -- | -- | -- | 0.696 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 136.83 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 6 |
| 5 | 137.91 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 3 |
| 14 | 138.91 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 6 |
| 34 | 140.74 | temperature | 20 | 270 | > th | dose dependent | rect. | 2 | 8 |
| 43 | 141.33 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 1 |
| 63 | 142.50 | radiation | 10 | 10 | < th | dose dependent | sin | 21 | NA |
| 65 | 142.70 | radiation | 1 | 30 | > th | dose dependent | rect. | 11 | 23 |
| 69 | 142.99 | radiation | 20 | 10 | < th | dose dependent | sin | 19 | NA |
| 89 | 143.89 | radiation | 40 | 10 | < th | dose dependent | sin | 18 | NA |
| 96 | 144.06 | radiation | 40 | 10 | < th | dose dependent | rect. | 8 | 12 |
| 136 | 145.18 | temperature | 20 | 720 | > th | dose independent | rect. | 24 | 9 |
| 137 | 145.18 | radiation | 40 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 142 | 145.30 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 5 |
| 154 | 145.47 | radiation | 40 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 165 | 145.74 | radiation | 40 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 173 | 145.99 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 4 |
| 190 | 146.39 | temperature | 20 | 720 | > th | dose independent | rect. | 24 | 4 |
| 193 | 146.44 | radiation | 40 | 10 | < th | dose dependent | no | NA | NA |
| 199 | 146.52 | radiation | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 217 | 146.85 | temperature | 25 | 720 | < th | dose dependent | sin | 8 | NA |
| 219 | 146.86 | temperature | 20 | 720 | > th | dose independent | rect. | 24 | 6 |
| 304 | 148.30 | temperature | 20 | 720 | < th | dose independent | sin | 8 | NA |
| 337 | 148.81 | temperature | 25 | 270 | < th | dose dependent | rect. | 7 | 2 |
| 346 | 148.86 | radiation | 1 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 378 | 149.30 | radiation | 1 | 10 | > th | dose dependent | sin | 17 | NA |
| 397 | 149.49 | radiation | 10 | 10 | > th | dose independent | rect. | 11 | 21 |
| 410 | 149.71 | radiation | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 470 | 150.55 | radiation | 30 | 10 | < th | dose independent | rect. | 12 | 23 |
| 473 | 150.59 | radiation | 30 | 10 | < th | dose independent | rect. | 8 | 12 |
| 483 | 150.67 | radiation | 10 | 10 | > th | dose independent | rect. | 11 | 23 |
| 486 | 150.72 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 4 |
| 492 | 150.79 | radiation | 1 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 503 | 150.88 | radiation | 1 | 90 | > th | dose dependent | rect. | 11 | 7 |
| 560 | 151.27 | radiation | 1 | 10 | > th | dose dependent | no | NA | NA |
| 561 | 151.27 | radiation | 1 | 10 | > th | dose dependent | rect. | 5 | 14 |
| 653 | 151.49 | radiation | 10 | 90 | > th | dose independent | rect. | 11 | 20 |
| 678 | 151.70 | radiation | 10 | 90 | > th | dose independent | rect. | 11 | 7 |
| 691 | 151.70 | radiation | 30 | 10 | < th | dose independent | rect. | 23 | 23 |
| 697 | 151.77 | radiation | 30 | 10 | < th | dose independent | rect. | 1 | 23 |
| 728 | 151.95 | radiation | 20 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 765 | 152.21 | radiation | 1 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 782 | 152.25 | radiation | 10 | 10 | < th | dose independent | sin | 20 | NA |
| 814 | 152.43 | temperature | 20 | 720 | > th | dose independent | sin | 7 | NA |
| 835 | 152.64 | radiation | 10 | 10 | > th | dose independent | sin | 18 | NA |
| 868 | 152.81 | radiation | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |