Os02g0684000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Tetratricopeptide-like helical domain containing protein.
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Os02g0684000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Tetratricopeptide-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 100.59 | 0.471 | 7.38 | 0.804 | 0.955 | -1.3 | -1.13 | 3.67 | 0.0382 | 18.6 | 26.5 | 5654 | -- | -- |
| 107.23 | 0.482 | 7.45 | 0.778 | 0.983 | -1.51 | -1.29 | -- | 0.139 | 18.5 | 21.1 | 22273 | -- | -- |
| 102.41 | 0.471 | 7.37 | 0.824 | 0.958 | -1.32 | -- | 3.7 | 0.0493 | 18.2 | 26.91 | 5772 | -- | -- |
| 109.43 | 0.487 | 7.44 | 0.879 | 0.966 | -1.55 | -- | -- | 0.14 | 18.2 | 20.7 | 23330 | -- | -- |
| 150.05 | 0.571 | 7.37 | 0.824 | -- | -1.32 | -- | 3.73 | 0.00117 | -- | 26.8 | 5658 | -- | -- |
| 143.85 | 0.562 | 7.58 | -0.698 | 0.974 | -- | -1.01 | -- | -0.476 | 18.4 | -- | -- | -- | -- |
| 145.91 | 0.566 | 7.58 | -0.683 | 0.975 | -- | -- | -- | -0.478 | 18 | -- | -- | -- | -- |
| 157.47 | 0.584 | 7.42 | 0.843 | -- | -1.54 | -- | -- | 0.118 | -- | 20.8 | 23026 | -- | -- |
| 110.03 | 0.489 | 7.48 | -- | 0.965 | -1.07 | -- | -- | -0.0372 | 18 | 23.02 | 7900 | -- | -- |
| 195.23 | 0.653 | 7.56 | -0.711 | -- | -- | -- | -- | -0.5 | -- | -- | -- | -- | -- |
| 158.2 | 0.588 | 7.56 | -- | 0.986 | -- | -- | -- | -0.402 | 18 | -- | -- | -- | -- |
| 156.45 | 0.583 | 7.46 | -- | -- | -1.13 | -- | -- | -0.039 | -- | 23.1 | 6989 | -- | -- |
| 208.57 | 0.674 | 7.54 | -- | -- | -- | -- | -- | -0.421 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 98.66 | temperature | 15 | 43200 | < th | dose dependent | rect. | 24 | 2 |
| 5 | 99.16 | humidity | 90 | 43200 | > th | dose dependent | rect. | 22 | 3 |
| 6 | 99.23 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 4 |
| 16 | 99.58 | humidity | 90 | 43200 | > th | dose independent | rect. | 18 | 9 |
| 25 | 99.73 | humidity | 90 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 28 | 99.79 | temperature | 20 | 4320 | > th | dose dependent | rect. | 2 | 1 |
| 35 | 99.88 | humidity | 90 | 43200 | > th | dose dependent | rect. | 16 | 13 |
| 38 | 99.90 | humidity | 90 | 43200 | < th | dose independent | rect. | 17 | 10 |
| 59 | 99.97 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 9 |
| 92 | 100.16 | humidity | 90 | 43200 | > th | dose dependent | sin | 13 | NA |
| 95 | 100.19 | humidity | 90 | 43200 | < th | dose independent | rect. | 21 | 4 |
| 96 | 100.19 | radiation | 20 | 43200 | > th | dose dependent | rect. | 16 | 16 |
| 98 | 100.20 | radiation | 20 | 43200 | < th | dose independent | rect. | 17 | 15 |
| 125 | 100.38 | humidity | 90 | 43200 | > th | dose independent | sin | 14 | NA |
| 129 | 100.40 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 144 | 100.49 | radiation | 40 | 43200 | < th | dose independent | rect. | 15 | 19 |
| 209 | 100.86 | radiation | 20 | 43200 | < th | dose independent | rect. | 5 | 3 |
| 216 | 100.86 | radiation | 20 | 43200 | < th | dose independent | rect. | 22 | 10 |
| 253 | 101.06 | radiation | 40 | 43200 | < th | dose independent | sin | 12 | NA |
| 275 | 101.16 | temperature | 15 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 300 | 101.23 | radiation | 40 | 43200 | < th | dose independent | rect. | 14 | 5 |
| 307 | 101.24 | radiation | 40 | 43200 | < th | dose independent | rect. | 14 | 3 |
| 322 | 101.25 | radiation | 40 | 43200 | < th | dose independent | rect. | 14 | 14 |
| 324 | 101.25 | radiation | 40 | 43200 | < th | dose independent | rect. | 14 | 16 |
| 336 | 101.30 | radiation | 20 | 43200 | > th | dose dependent | rect. | 6 | 2 |
| 367 | 101.41 | temperature | 15 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 387 | 101.47 | humidity | 90 | 43200 | < th | dose independent | sin | 15 | NA |
| 396 | 101.50 | radiation | 1 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 419 | 101.57 | humidity | 90 | 43200 | > th | dose dependent | rect. | 4 | 2 |
| 422 | 101.59 | temperature | 15 | 43200 | < th | dose dependent | sin | 10 | NA |
| 432 | 101.61 | temperature | 15 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 448 | 101.67 | radiation | 10 | 43200 | < th | dose independent | rect. | 16 | 3 |
| 540 | 101.88 | radiation | 10 | 43200 | < th | dose independent | sin | 12 | NA |
| 562 | 101.96 | humidity | 60 | 43200 | < th | dose independent | rect. | 10 | 2 |
| 617 | 102.06 | radiation | 40 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 660 | 102.17 | humidity | 60 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 696 | 102.23 | temperature | 15 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 748 | 102.34 | wind | 5 | 43200 | > th | dose dependent | rect. | 13 | 2 |
| 765 | 102.39 | wind | 5 | 43200 | > th | dose dependent | rect. | 11 | 4 |
| 772 | 102.40 | radiation | 40 | 43200 | > th | dose dependent | rect. | 14 | 20 |
| 834 | 102.49 | radiation | 1 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 836 | 102.49 | radiation | 1 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 925 | 102.62 | temperature | 25 | 4320 | > th | dose independent | rect. | 2 | 9 |
| 930 | 102.63 | radiation | 1 | 43200 | > th | dose independent | rect. | 10 | 1 |