Os02g0682200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to MADS box protein.
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Os02g0682200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to MADS box protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 334.91 | 0.86 | 4.2 | 0.493 | 1.04 | 2.17 | 0.438 | 0.105 | -0.4 | 10.3 | 24.2 | 1490 | -- | -- |
| 334.91 | 0.852 | 4.2 | 0.511 | 1.04 | 2.16 | 0.436 | -- | -0.398 | 10.3 | 24.13 | 1490 | -- | -- |
| 335.6 | 0.853 | 4.2 | 0.507 | 1.04 | 2.19 | -- | 0.16 | -0.4 | 10.3 | 24.08 | 1513 | -- | -- |
| 335.63 | 0.853 | 4.19 | 0.533 | 1.04 | 2.18 | -- | -- | -0.395 | 10.3 | 24.1 | 1516 | -- | -- |
| 362.66 | 0.887 | 4.2 | 0.688 | -- | 2.4 | -- | -0.995 | -0.362 | -- | 31.37 | 807 | -- | -- |
| 393.34 | 0.93 | 4.29 | -0.134 | 1.04 | -- | 0.479 | -- | -0.82 | 10.4 | -- | -- | -- | -- |
| 394.25 | 0.93 | 4.29 | -0.114 | 1.04 | -- | -- | -- | -0.818 | 10.5 | -- | -- | -- | -- |
| 363.64 | 0.888 | 4.21 | 0.541 | -- | 2.44 | -- | -- | -0.364 | -- | 30.61 | 809 | -- | -- |
| 341.9 | 0.861 | 4.21 | -- | 1.04 | 1.89 | -- | -- | -0.498 | 10.3 | 24.2 | 1490 | -- | -- |
| 460.68 | 1 | 4.32 | -0.133 | -- | -- | -- | -- | -0.822 | -- | -- | -- | -- | -- |
| 394.59 | 0.929 | 4.29 | -- | 1.04 | -- | -- | -- | -0.805 | 10.5 | -- | -- | -- | -- |
| 370.45 | 0.896 | 4.24 | -- | -- | 2.23 | -- | -- | -0.472 | -- | 31.1 | 802 | -- | -- |
| 461.14 | 1 | 4.31 | -- | -- | -- | -- | -- | -0.808 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 328.20 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 3 |
| 2 | 328.25 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 3 |
| 5 | 329.15 | temperature | 25 | 1440 | < th | dose dependent | rect. | 2 | 1 |
| 10 | 330.11 | temperature | 15 | 270 | > th | dose dependent | rect. | 11 | 22 |
| 14 | 330.49 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 6 |
| 45 | 331.15 | temperature | 10 | 1440 | > th | dose dependent | rect. | 2 | 1 |
| 47 | 331.18 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 8 |
| 83 | 331.67 | temperature | 25 | 1440 | < th | dose dependent | sin | 7 | NA |
| 111 | 331.83 | temperature | 25 | 1440 | < th | dose dependent | rect. | 5 | 2 |
| 131 | 332.05 | temperature | 20 | 4320 | > th | dose independent | rect. | 19 | 9 |
| 152 | 332.21 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 9 |
| 196 | 332.49 | temperature | 20 | 1440 | > th | dose independent | rect. | 2 | 8 |
| 233 | 332.70 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 2 |
| 255 | 332.89 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 2 |
| 301 | 333.15 | temperature | 20 | 1440 | < th | dose independent | rect. | 2 | 8 |
| 318 | 333.26 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 2 |
| 362 | 333.50 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 21 |
| 368 | 333.55 | temperature | 10 | 1440 | > th | dose dependent | sin | 7 | NA |
| 490 | 334.14 | temperature | 30 | 270 | < th | dose dependent | rect. | 16 | 21 |
| 515 | 334.28 | temperature | 20 | 4320 | > th | dose independent | rect. | 19 | 14 |
| 534 | 334.36 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 13 |
| 583 | 334.55 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 18 |
| 695 | 335.00 | temperature | 20 | 4320 | > th | dose independent | sin | 13 | NA |
| 758 | 335.17 | temperature | 20 | 1440 | > th | dose independent | sin | 6 | NA |
| 814 | 335.41 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 17 |
| 821 | 335.43 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 833 | 335.47 | temperature | 20 | 4320 | < th | dose independent | sin | 13 | NA |
| 912 | 335.73 | temperature | 20 | 1440 | < th | dose independent | sin | 6 | NA |
| 934 | 335.80 | temperature | 25 | 1440 | < th | dose dependent | rect. | 5 | 23 |