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Os02g0681900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : GRAS transcription factor domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.3 (0.0291) R2 : 0.711
β1 : 1.96 (0.106) R2dD : 0.224 R2D : 0.189
β2 : 2.07 (0.0749) R2dC : 0.488 R2C : 0.489
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.32 (0.062) R2dN8 : 0.0225 R2N8 : -0.00612
σ : 0.546
deviance : 136.15
__
_____
C
peak time of C : 7.38
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
124.56 0.524 10.3 2.19 2.07 1.11 0.22 -0.552 0.412 7.54 20.56 89 -- --
124.73 0.52 10.3 2.18 2.07 1.28 0.228 -- 0.411 7.55 20.53 85 -- --
124.67 0.52 10.3 2.19 2.07 1.1 -- -0.572 0.412 7.53 20.6 77 -- --
124.85 0.52 10.3 2.18 2.07 1.3 -- -- 0.412 7.55 20.45 78 -- --
278.49 0.777 10.2 2.87 -- 2.35 -- -1.48 0.826 -- 33.83 498 -- --
135.95 0.547 10.3 1.96 2.07 -- 0.272 -- 0.32 7.4 -- -- -- --
136.15 0.546 10.3 1.96 2.07 -- -- -- 0.32 7.38 -- -- -- --
276.21 0.774 10.3 2.53 -- 2.4 -- -- 0.704 -- 34.1 504 -- --
235.93 0.715 10.4 -- 2.13 -0.422 -- -- 0.0498 7.12 57.82 14 -- --
364.77 0.892 10.4 2 -- -- -- -- 0.353 -- -- -- -- --
237.82 0.721 10.4 -- 2.09 -- -- -- 0.101 7.32 -- -- -- --
432.03 0.968 10.4 -- -- 1.52 -- -- 0.312 -- 38.55 450 -- --
470.07 1.01 10.4 -- -- -- -- -- 0.132 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 114.09 humidity 90 14400 < th dose dependent rect. 2 5
12 115.54 humidity 70 14400 > th dose dependent rect. 4 1
15 115.72 humidity 50 14400 > th dose dependent rect. 3 4
28 116.73 humidity 80 14400 < th dose independent rect. 20 11
29 116.76 humidity 80 14400 < th dose independent rect. 21 9
37 116.96 humidity 80 14400 < th dose independent rect. 22 4
59 117.17 humidity 80 14400 > th dose independent rect. 21 11
60 117.22 humidity 80 14400 < th dose dependent rect. 22 1
99 117.76 humidity 80 14400 < th dose independent rect. 24 1
110 117.82 humidity 80 14400 < th dose independent rect. 5 1
124 117.92 humidity 80 14400 > th dose independent rect. 22 8
153 118.15 humidity 80 14400 > th dose independent rect. 24 2
172 118.27 humidity 80 14400 > th dose independent rect. 4 1
181 118.32 humidity 80 14400 > th dose independent rect. 23 4
275 119.60 radiation 1 1440 < th dose independent rect. 9 2
276 119.60 radiation 1 1440 < th dose dependent rect. 9 2
312 120.23 wind 9 14400 < th dose independent rect. 12 3
315 120.27 humidity 50 43200 < th dose independent rect. 17 14
318 120.34 wind 7 14400 > th dose independent rect. 12 2
329 120.47 humidity 80 14400 < th dose independent sin 10 NA
344 120.54 humidity 50 43200 < th dose independent rect. 17 3
353 120.65 wind 7 14400 > th dose dependent rect. 12 2
354 120.67 wind 1 43200 < th dose independent rect. 10 2
357 120.70 wind 9 14400 < th dose independent rect. 10 5
358 120.74 wind 1 43200 > th dose independent rect. 10 2
362 120.80 humidity 80 14400 > th dose independent sin 10 NA
364 120.80 wind 9 14400 < th dose independent rect. 12 5
375 120.91 wind 7 14400 > th dose dependent rect. 10 7
379 120.93 atmosphere 1015 720 < th dose independent rect. 21 14
387 120.99 temperature 30 90 < th dose dependent rect. 19 17
388 121.00 humidity 50 43200 > th dose independent rect. 17 3
398 121.06 atmosphere 1015 720 < th dose independent rect. 21 21
404 121.09 humidity 50 43200 > th dose independent rect. 16 15
408 121.14 wind 7 14400 > th dose dependent rect. 5 12
410 121.17 wind 1 43200 > th dose independent rect. 9 4
430 121.21 humidity 50 43200 < th dose dependent rect. 16 15
442 121.26 wind 7 14400 > th dose dependent sin 2 NA
445 121.27 radiation 1 270 < th dose dependent rect. 8 8
457 121.30 wind 3 14400 < th dose independent rect. 2 1
458 121.30 radiation 1 270 < th dose independent rect. 8 7
466 121.33 wind 3 14400 > th dose independent rect. 18 12
481 121.37 radiation 1 90 < th dose dependent rect. 7 10
484 121.38 wind 1 43200 < th dose independent rect. 9 4
490 121.40 radiation 1 90 < th dose independent rect. 7 10
492 121.41 wind 9 14400 < th dose independent sin 1 NA
496 121.42 wind 9 14400 < th dose independent rect. 24 15
506 121.44 wind 1 43200 < th dose dependent rect. 10 1
526 121.48 wind 3 14400 < th dose independent rect. 18 12
529 121.48 humidity 50 43200 < th dose dependent rect. 16 4
532 121.49 wind 1 43200 < th dose independent rect. 18 9
538 121.51 humidity 50 43200 > th dose independent rect. 16 8
542 121.52 humidity 50 43200 > th dose independent rect. 16 10
557 121.55 humidity 50 43200 < th dose dependent rect. 16 1
578 121.62 atmosphere 1015 720 < th dose independent rect. 23 10
695 121.90 wind 9 14400 > th dose independent rect. 10 5
702 121.92 wind 9 14400 > th dose independent sin 23 NA
715 121.96 wind 9 14400 > th dose independent rect. 13 5
716 121.97 wind 3 14400 > th dose independent rect. 2 2
728 121.98 wind 9 14400 < th dose independent rect. 20 21
733 121.99 wind 3 14400 > th dose independent sin 12 NA
772 122.07 radiation 1 1440 > th dose independent rect. 9 4
773 122.07 wind 9 14400 > th dose independent rect. 10 8
792 122.12 wind 3 14400 < th dose independent sin 12 NA
807 122.13 wind 1 43200 < th dose dependent rect. 18 9
879 122.29 wind 9 14400 > th dose independent rect. 20 21
883 122.30 wind 1 43200 < th dose independent rect. 20 3
894 122.34 wind 1 43200 < th dose independent rect. 20 7
901 122.35 atmosphere 995 43200 < th dose independent rect. 16 23
903 122.35 atmosphere 1000 10 > th dose dependent rect. 11 14
904 122.35 wind 1 14400 > th dose dependent rect. 22 18
927 122.40 wind 1 43200 < th dose dependent rect. 18 7
931 122.41 atmosphere 995 43200 > th dose independent rect. 17 22
936 122.42 wind 3 14400 > th dose independent rect. 18 19
937 122.42 atmosphere 995 43200 > th dose independent rect. 21 19
948 122.44 wind 1 43200 < th dose independent rect. 6 1
970 122.46 atmosphere 995 43200 < th dose independent rect. 21 20