Os02g0681700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase domain containing protein.
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Os02g0681700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 96.48 | 0.461 | 10.2 | -0.498 | 1.26 | 1.33 | -0.248 | -2.9 | -0.115 | 11.5 | 17.73 | 3965 | -- | -- |
| 101.25 | 0.469 | 10.1 | -0.128 | 1.24 | 1.62 | -0.067 | -- | -0.16 | 11.4 | 14.38 | 11023 | -- | -- |
| 96.74 | 0.458 | 10.2 | -0.498 | 1.26 | 1.33 | -- | -2.85 | -0.114 | 11.5 | 17.8 | 3974 | -- | -- |
| 100.59 | 0.467 | 10.1 | -0.107 | 1.22 | 1.58 | -- | -- | -0.14 | 11.4 | 11.3 | 11163 | -- | -- |
| 159.37 | 0.591 | 10.1 | 0.165 | -- | 1.85 | -- | -1.84 | -0.00358 | -- | 17.88 | 5953 | -- | -- |
| 142.2 | 0.559 | 10 | 0.861 | 1.16 | -- | -0.197 | -- | 0.371 | 11.3 | -- | -- | -- | -- |
| 142.37 | 0.559 | 10 | 0.853 | 1.16 | -- | -- | -- | 0.37 | 11.3 | -- | -- | -- | -- |
| 163.03 | 0.597 | 10.1 | 0.465 | -- | 1.78 | -- | -- | 0.0814 | -- | 17.88 | 5953 | -- | -- |
| 100.85 | 0.468 | 10.1 | -- | 1.22 | 1.53 | -- | -- | -0.108 | 11.4 | 9.47 | 10892 | -- | -- |
| 227.04 | 0.704 | 10 | 0.824 | -- | -- | -- | -- | 0.359 | -- | -- | -- | -- | -- |
| 161.56 | 0.595 | 10 | -- | 1.15 | -- | -- | -- | 0.275 | 11.3 | -- | -- | -- | -- |
| 168.45 | 0.606 | 10.1 | -- | -- | 1.9 | -- | -- | 0.0143 | -- | 17.88 | 5953 | -- | -- |
| 244.94 | 0.731 | 10 | -- | -- | -- | -- | -- | 0.267 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 88.98 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 2 | 90.38 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 3 | 90.60 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 14 | 91.33 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 16 | 91.79 | radiation | 40 | 4320 | < th | dose dependent | rect. | 18 | 11 |
| 21 | 92.16 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 13 |
| 26 | 92.32 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 22 |
| 31 | 92.57 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 22 |
| 33 | 92.64 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 3 |
| 38 | 92.67 | wind | 3 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 39 | 92.69 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 6 |
| 52 | 92.95 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 19 |
| 71 | 93.41 | wind | 3 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 72 | 93.46 | radiation | 1 | 14400 | > th | dose independent | sin | 12 | NA |
| 73 | 93.57 | radiation | 1 | 14400 | > th | dose independent | rect. | 14 | 18 |
| 74 | 93.57 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 23 |
| 76 | 93.59 | radiation | 1 | 14400 | > th | dose independent | rect. | 11 | 21 |
| 91 | 93.74 | radiation | 1 | 14400 | > th | dose independent | rect. | 14 | 23 |
| 95 | 93.77 | radiation | 30 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 113 | 93.80 | radiation | 1 | 14400 | > th | dose independent | no | NA | NA |
| 114 | 93.80 | radiation | 1 | 14400 | > th | dose independent | rect. | 4 | 15 |
| 173 | 93.85 | radiation | 1 | 14400 | < th | dose independent | sin | 11 | NA |
| 177 | 93.86 | radiation | 1 | 14400 | < th | dose independent | rect. | 14 | 18 |
| 189 | 93.88 | radiation | 1 | 14400 | < th | dose independent | rect. | 11 | 21 |
| 201 | 93.90 | temperature | 20 | 4320 | > th | dose dependent | rect. | 10 | 1 |
| 222 | 93.98 | radiation | 1 | 14400 | > th | dose independent | rect. | 7 | 23 |
| 224 | 93.98 | radiation | 1 | 14400 | < th | dose independent | rect. | 14 | 23 |
| 230 | 94.02 | radiation | 30 | 14400 | < th | dose dependent | rect. | 18 | 3 |
| 231 | 94.03 | radiation | 1 | 14400 | < th | dose independent | rect. | 3 | 18 |
| 237 | 94.04 | radiation | 1 | 14400 | < th | dose independent | no | NA | NA |
| 238 | 94.04 | radiation | 1 | 14400 | > th | dose independent | rect. | 4 | 12 |
| 243 | 94.04 | radiation | 1 | 14400 | < th | dose independent | rect. | 4 | 16 |
| 278 | 94.05 | radiation | 1 | 14400 | < th | dose independent | rect. | 4 | 12 |
| 292 | 94.05 | radiation | 1 | 14400 | < th | dose independent | rect. | 20 | 23 |
| 296 | 94.06 | radiation | 1 | 14400 | > th | dose independent | sin | 2 | NA |
| 307 | 94.06 | radiation | 1 | 14400 | < th | dose dependent | rect. | 14 | 18 |
| 322 | 94.11 | radiation | 1 | 14400 | < th | dose independent | sin | 2 | NA |
| 365 | 94.14 | humidity | 90 | 43200 | > th | dose dependent | rect. | 12 | 3 |
| 395 | 94.23 | radiation | 1 | 14400 | < th | dose dependent | rect. | 11 | 21 |
| 426 | 94.29 | radiation | 10 | 14400 | < th | dose dependent | rect. | 18 | 6 |
| 438 | 94.30 | radiation | 1 | 14400 | < th | dose dependent | rect. | 14 | 22 |
| 456 | 94.34 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 14 |
| 511 | 94.46 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 19 |
| 513 | 94.47 | radiation | 1 | 14400 | < th | dose dependent | no | NA | NA |
| 517 | 94.47 | radiation | 1 | 14400 | < th | dose dependent | rect. | 1 | 20 |
| 519 | 94.47 | radiation | 1 | 14400 | < th | dose dependent | rect. | 3 | 21 |
| 522 | 94.47 | radiation | 1 | 14400 | < th | dose dependent | rect. | 23 | 21 |
| 537 | 94.48 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 16 |
| 560 | 94.49 | humidity | 90 | 43200 | < th | dose independent | rect. | 8 | 11 |
| 583 | 94.51 | radiation | 1 | 14400 | < th | dose dependent | rect. | 7 | 23 |
| 586 | 94.52 | radiation | 1 | 14400 | < th | dose dependent | sin | 13 | NA |
| 588 | 94.52 | radiation | 1 | 14400 | < th | dose dependent | rect. | 14 | 12 |
| 594 | 94.53 | radiation | 1 | 14400 | < th | dose dependent | rect. | 14 | 10 |
| 611 | 94.54 | radiation | 1 | 14400 | < th | dose dependent | rect. | 14 | 6 |
| 651 | 94.60 | wind | 5 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 687 | 94.68 | radiation | 1 | 14400 | < th | dose independent | rect. | 4 | 4 |
| 695 | 94.68 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 19 |
| 698 | 94.69 | radiation | 1 | 14400 | > th | dose independent | rect. | 4 | 4 |
| 704 | 94.69 | radiation | 1 | 14400 | < th | dose independent | rect. | 23 | 9 |
| 726 | 94.72 | humidity | 90 | 43200 | > th | dose independent | rect. | 6 | 12 |
| 758 | 94.74 | radiation | 1 | 14400 | < th | dose dependent | sin | 23 | NA |
| 768 | 94.76 | radiation | 1 | 14400 | > th | dose independent | rect. | 14 | 5 |
| 825 | 94.83 | radiation | 1 | 14400 | > th | dose independent | rect. | 9 | 10 |
| 837 | 94.83 | radiation | 1 | 14400 | < th | dose dependent | rect. | 3 | 5 |
| 838 | 94.83 | radiation | 1 | 14400 | < th | dose dependent | rect. | 1 | 7 |
| 839 | 94.83 | radiation | 1 | 14400 | < th | dose dependent | rect. | 23 | 9 |
| 850 | 94.84 | radiation | 1 | 14400 | < th | dose dependent | rect. | 10 | 15 |
| 867 | 94.85 | radiation | 1 | 14400 | < th | dose dependent | rect. | 10 | 11 |
| 931 | 94.91 | humidity | 90 | 43200 | < th | dose independent | rect. | 8 | 2 |
| 976 | 94.96 | humidity | 90 | 43200 | < th | dose independent | rect. | 11 | 9 |