Os02g0680700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os02g0680700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 68.02 | 0.388 | 11.7 | -0.682 | 5.01 | 3.75 | 0.639 | 0.447 | -0.523 | 9.16 | 1.333 | 257 | 9.91 | -- |
| 66.79 | 0.381 | 11.7 | -0.633 | 5.13 | 3.76 | 0.169 | -- | -0.523 | 9.2 | 0.8467 | 222 | 9.43 | -- |
| 66.81 | 0.381 | 11.7 | -0.642 | 4.99 | 3.57 | -- | -0.0111 | -0.528 | 9.04 | 0.62 | 215 | 9.49 | -- |
| 66.74 | 0.381 | 11.7 | -0.639 | 5 | 3.55 | -- | -- | -0.519 | 9.04 | 0.6172 | 212 | 9.42 | -- |
| 126.93 | 0.525 | 11.9 | -0.521 | -- | 4.73 | -- | -0.195 | -0.537 | -- | 0.288 | 859 | 8.19 | -- |
| 178.05 | 0.626 | 11.8 | -0.852 | 3.72 | -- | 0.913 | -- | -0.674 | 6.19 | -- | -- | -- | -- |
| 180.1 | 0.628 | 11.8 | -0.842 | 3.73 | -- | -- | -- | -0.677 | 6.18 | -- | -- | -- | -- |
| 117.66 | 0.505 | 11.8 | -0.419 | -- | 5.34 | -- | -- | -0.316 | -- | 1.416 | 955 | 9.64 | -- |
| 76.35 | 0.407 | 11.7 | -- | 5.05 | 3.54 | -- | -- | -0.491 | 9.02 | 0.2446 | 192 | 9.29 | -- |
| 900.01 | 1.4 | 11.9 | -0.739 | -- | -- | -- | -- | -0.595 | -- | -- | -- | -- | -- |
| 198.8 | 0.66 | 11.8 | -- | 3.71 | -- | -- | -- | -0.583 | 6.19 | -- | -- | -- | -- |
| 121.51 | 0.513 | 11.9 | -- | -- | 5.63 | -- | -- | -0.371 | -- | 0.3957 | 960 | 9.99 | -- |
| 914.42 | 1.41 | 11.9 | -- | -- | -- | -- | -- | -0.513 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 62.87 | radiation | 1.0 | 270 | > th | dose independent | rect. | 13 | 6 |
| 12 | 62.97 | temperature | 20.0 | 270 | > th | dose independent | rect. | 13 | 5 |
| 14 | 63.60 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 13 | 5 |
| 15 | 64.09 | temperature | 20.0 | 270 | > th | dose independent | rect. | 14 | 3 |
| 18 | 65.74 | radiation | 1.0 | 270 | > th | dose independent | rect. | 14 | 3 |
| 20 | 66.44 | humidity | 90.0 | 270 | < th | dose independent | rect. | 13 | 5 |
| 21 | 66.59 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 14 | 3 |
| 23 | 66.89 | humidity | 90.0 | 270 | < th | dose independent | rect. | 14 | 3 |
| 24 | 67.26 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 12 | 7 |
| 34 | 69.57 | radiation | 1.0 | 270 | < th | dose dependent | sin | 16 | NA |
| 35 | 69.67 | wind | 1.0 | 270 | > th | dose independent | rect. | 13 | 5 |
| 39 | 69.95 | radiation | 1.0 | 270 | < th | dose independent | sin | 16 | NA |
| 40 | 70.05 | radiation | 1.0 | 270 | > th | dose independent | sin | 16 | NA |
| 42 | 70.18 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 13 | 5 |
| 43 | 70.18 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 13 | 5 |
| 44 | 70.43 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 18 | 19 |
| 45 | 70.45 | wind | 9.0 | 270 | < th | dose independent | rect. | 13 | 5 |
| 46 | 70.52 | temperature | 10.0 | 270 | > th | dose independent | rect. | 13 | 5 |
| 48 | 70.52 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 13 | 5 |
| 50 | 70.52 | temperature | 10.0 | 270 | > th | dose independent | rect. | 18 | 19 |
| 53 | 70.84 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 14 | 3 |
| 54 | 70.84 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 14 | 3 |
| 56 | 71.02 | temperature | 10.0 | 270 | > th | dose independent | rect. | 14 | 3 |
| 58 | 71.02 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 14 | 3 |
| 60 | 71.02 | temperature | 10.0 | 270 | > th | dose independent | rect. | 17 | 21 |
| 63 | 71.09 | wind | 9.0 | 270 | < th | dose independent | rect. | 14 | 3 |
| 70 | 71.37 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 13 | 18 |
| 73 | 71.58 | wind | 9.0 | 270 | < th | dose independent | rect. | 18 | 19 |
| 98 | 73.21 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 18 | 19 |
| 99 | 73.21 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 18 | 19 |
| 103 | 73.42 | humidity | 50.0 | 270 | > th | dose independent | rect. | 17 | 20 |
| 108 | 74.08 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 12 | 20 |
| 109 | 74.09 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 13 | 4 |
| 139 | 75.70 | radiation | 40.0 | 270 | < th | dose independent | rect. | 14 | 3 |
| 141 | 75.96 | temperature | 20.0 | 270 | > th | dose independent | rect. | 15 | 1 |
| 148 | 76.22 | wind | 1.0 | 270 | > th | dose dependent | rect. | 14 | 3 |
| 168 | 77.36 | radiation | 40.0 | 90 | < th | dose independent | rect. | 14 | 5 |
| 219 | 78.84 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 14 | 6 |
| 249 | 79.72 | temperature | 20.0 | 10 | > th | dose independent | rect. | 14 | 6 |
| 271 | 80.79 | temperature | 10.0 | 270 | > th | dose independent | rect. | 23 | 9 |
| 272 | 80.79 | temperature | 30.0 | 270 | < th | dose independent | rect. | 23 | 9 |
| 273 | 80.79 | humidity | 50.0 | 270 | > th | dose independent | rect. | 23 | 9 |
| 275 | 80.79 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 23 | 9 |
| 276 | 80.79 | temperature | 10.0 | 270 | > th | dose independent | rect. | 8 | 15 |
| 277 | 80.83 | wind | 9.0 | 270 | < th | dose independent | rect. | 23 | 9 |
| 286 | 80.93 | radiation | 40.0 | 270 | < th | dose independent | rect. | 23 | 9 |
| 291 | 81.07 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 23 | 9 |
| 298 | 81.52 | radiation | 40.0 | 270 | < th | dose independent | rect. | 15 | 1 |
| 299 | 81.66 | wind | 1.0 | 270 | > th | dose independent | rect. | 15 | 1 |
| 311 | 82.05 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 23 | 9 |
| 312 | 82.05 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 23 | 9 |
| 316 | 82.34 | wind | 9.0 | 270 | < th | dose independent | rect. | 15 | 1 |
| 317 | 82.34 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 15 | 1 |
| 318 | 82.34 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 15 | 1 |
| 319 | 82.41 | temperature | 10.0 | 270 | > th | dose independent | rect. | 15 | 1 |
| 321 | 82.41 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 15 | 1 |
| 325 | 82.41 | temperature | 10.0 | 270 | > th | dose independent | rect. | 16 | 23 |
| 329 | 82.48 | wind | 1.0 | 270 | > th | dose independent | rect. | 18 | 19 |
| 371 | 83.51 | radiation | 1.0 | 270 | < th | dose independent | rect. | 16 | 9 |
| 372 | 83.54 | wind | 9.0 | 270 | < th | dose independent | rect. | 8 | 15 |
| 401 | 84.08 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 14 | 6 |
| 402 | 84.08 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 14 | 6 |
| 409 | 84.17 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 16 | 9 |
| 436 | 85.18 | wind | 1.0 | 10 | > th | dose independent | rect. | 14 | 6 |
| 449 | 85.70 | temperature | 10.0 | 10 | > th | dose independent | rect. | 14 | 6 |
| 451 | 85.70 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 14 | 6 |
| 453 | 85.70 | temperature | 10.0 | 10 | > th | dose independent | rect. | 20 | 18 |
| 454 | 85.70 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 20 | 18 |
| 455 | 85.70 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 14 | 3 |
| 465 | 86.04 | radiation | 40.0 | 10 | < th | dose independent | rect. | 14 | 6 |
| 469 | 86.11 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 14 | 16 |
| 497 | 86.41 | wind | 9.0 | 10 | < th | dose independent | rect. | 14 | 6 |
| 559 | 87.31 | wind | 9.0 | 10 | < th | dose independent | rect. | 20 | 18 |
| 567 | 87.66 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 23 | 9 |
| 570 | 87.72 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 8 | 15 |
| 571 | 87.72 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 8 | 15 |
| 580 | 87.95 | humidity | 60.0 | 270 | > th | dose independent | rect. | 17 | 8 |
| 594 | 88.16 | radiation | 1.0 | 270 | < th | dose independent | rect. | 8 | 17 |
| 597 | 88.20 | temperature | 30.0 | 270 | < th | dose independent | rect. | 17 | 8 |
| 611 | 88.51 | temperature | 30.0 | 270 | < th | dose independent | rect. | 18 | 18 |
| 617 | 88.62 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 13 | 18 |
| 619 | 88.62 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 13 | 18 |
| 635 | 88.74 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 14 | 3 |
| 642 | 88.86 | temperature | 10.0 | 270 | > th | dose independent | rect. | 7 | 6 |
| 643 | 88.86 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 7 | 6 |
| 644 | 88.86 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 7 | 6 |
| 645 | 88.86 | temperature | 10.0 | 270 | > th | dose independent | rect. | 13 | 18 |
| 649 | 88.91 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 8 | 17 |
| 657 | 88.96 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 6 |
| 660 | 88.96 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 6 |
| 667 | 89.03 | wind | 9.0 | 270 | < th | dose independent | rect. | 13 | 18 |
| 678 | 89.19 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 14 | 6 |
| 679 | 89.21 | wind | 1.0 | 270 | > th | dose independent | rect. | 6 | 7 |
| 739 | 89.89 | wind | 9.0 | 270 | < th | dose independent | rect. | 7 | 6 |
| 752 | 90.19 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 20 | 18 |
| 754 | 90.19 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 20 | 18 |
| 771 | 90.52 | wind | 9.0 | 270 | < th | dose independent | rect. | 1 | 16 |
| 774 | 90.53 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 23 | 9 |
| 787 | 90.70 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 15 | 5 |
| 790 | 90.70 | radiation | 1.0 | 270 | > th | dose independent | rect. | 7 | 6 |
| 791 | 90.70 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 20 | 19 |
| 832 | 91.13 | humidity | 50.0 | 270 | > th | dose independent | rect. | 7 | 6 |
| 834 | 91.20 | temperature | 10.0 | 270 | > th | dose independent | rect. | 17 | 8 |
| 835 | 91.20 | radiation | 20.0 | 270 | < th | dose independent | rect. | 17 | 8 |
| 838 | 91.20 | temperature | 10.0 | 270 | > th | dose independent | rect. | 1 | 16 |
| 839 | 91.20 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 1 | 16 |
| 847 | 91.31 | wind | 9.0 | 270 | < th | dose independent | rect. | 17 | 8 |
| 861 | 91.55 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 15 | 17 |
| 914 | 92.13 | radiation | 1.0 | 270 | > th | dose dependent | sin | 14 | NA |
| 936 | 92.34 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 16 |
| 938 | 92.34 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 16 |
| 960 | 92.66 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 17 | 8 |
| 971 | 92.76 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 18 | 19 |
| 983 | 92.90 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 14 | 3 |