Os02g0680400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to CaaX processing zinc-metallo endoprotease.
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Os02g0680400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to CaaX processing zinc-metallo endoprotease.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34.32 | 0.275 | 8.73 | 1.13 | 0.628 | 0.906 | 0.121 | -0.17 | -0.0809 | 8.07 | 25.15 | 10 | -- | -- |
| 34.36 | 0.275 | 8.73 | 1.1 | 0.631 | 0.916 | 0.148 | -- | -0.0871 | 8.08 | 25.1 | 23 | -- | -- |
| 34.36 | 0.273 | 8.73 | 1.14 | 0.628 | 0.904 | -- | -0.2 | -0.0805 | 8.07 | 25.14 | 10 | -- | -- |
| 34.43 | 0.275 | 8.73 | 1.11 | 0.631 | 0.917 | -- | -- | -0.0871 | 8.07 | 25.1 | 23 | -- | -- |
| 43.03 | 0.306 | 8.73 | 1.26 | -- | 1.08 | -- | -0.43 | -0.00166 | -- | 31.2 | 390 | -- | -- |
| 46.97 | 0.321 | 8.77 | 0.892 | 0.623 | -- | 0.179 | -- | -0.269 | 6.93 | -- | -- | -- | -- |
| 47.05 | 0.321 | 8.77 | 0.895 | 0.623 | -- | -- | -- | -0.269 | 6.92 | -- | -- | -- | -- |
| 42.22 | 0.303 | 8.74 | 1.18 | -- | 1.29 | -- | -- | -0.0763 | -- | 39.02 | 422 | -- | -- |
| 64.01 | 0.375 | 8.77 | -- | 0.629 | 0.502 | -- | -- | -0.282 | 7.45 | 25.1 | 23 | -- | -- |
| 67.43 | 0.384 | 8.78 | 0.908 | -- | -- | -- | -- | -0.258 | -- | -- | -- | -- | -- |
| 68.15 | 0.386 | 8.79 | -- | 0.634 | -- | -- | -- | -0.369 | 6.84 | -- | -- | -- | -- |
| 76.31 | 0.407 | 8.78 | -- | -- | 0.89 | -- | -- | -0.255 | -- | 68.26 | 388 | -- | -- |
| 89.17 | 0.441 | 8.81 | -- | -- | -- | -- | -- | -0.358 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 33.67 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 2 | 33.69 | wind | 9.0 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 3 | 33.83 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 4 | 33.91 | wind | 9.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 6 | 34.08 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 7 | 34.09 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 8 | 34.09 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 9 | 34.12 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 10 | 34.17 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 11 | 34.17 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 14 | 34.28 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 11 | 22 |
| 17 | 34.33 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 18 | 34.34 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 19 | 34.34 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 21 | 34.36 | temperature | 25.0 | 10 | < th | dose dependent | no | NA | NA |
| 27 | 34.38 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 2 |
| 28 | 34.38 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 30 | 34.38 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 31 | 34.38 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 33 | 34.39 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 37 | 34.40 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 39 | 34.40 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 44 | 34.42 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 21 | 23 |
| 85 | 34.64 | wind | 9.0 | 14400 | < th | dose independent | rect. | 18 | 3 |
| 115 | 34.76 | wind | 9.0 | 14400 | > th | dose independent | rect. | 18 | 4 |
| 118 | 34.76 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 138 | 34.82 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 149 | 34.86 | wind | 9.0 | 14400 | > th | dose independent | rect. | 20 | 5 |
| 206 | 34.98 | wind | 9.0 | 14400 | < th | dose independent | rect. | 18 | 9 |
| 210 | 34.99 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 13 | 23 |
| 225 | 35.02 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 8 | 23 |
| 234 | 35.04 | temperature | 10.0 | 10 | > th | dose dependent | no | NA | NA |
| 260 | 35.13 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 15 | 3 |
| 279 | 35.18 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 17 | 17 |
| 320 | 35.27 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 375 | 35.44 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 396 | 35.52 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 21 | 23 |
| 407 | 35.55 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 20 | 14 |
| 563 | 35.92 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 578 | 35.97 | wind | 9.0 | 14400 | > th | dose independent | rect. | 17 | 17 |
| 586 | 35.98 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 597 | 36.00 | wind | 9.0 | 14400 | > th | dose independent | rect. | 20 | 14 |
| 641 | 36.07 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 24 | 23 |
| 657 | 36.12 | wind | 9.0 | 14400 | > th | dose dependent | sin | 11 | NA |
| 664 | 36.14 | wind | 9.0 | 14400 | < th | dose independent | rect. | 18 | 16 |
| 724 | 36.29 | wind | 9.0 | 14400 | < th | dose independent | rect. | 20 | 14 |
| 728 | 36.30 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 730 | 36.31 | atmosphere | 1000.0 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 732 | 36.31 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 8 | 8 |
| 739 | 36.33 | atmosphere | 1000.0 | 14400 | < th | dose independent | rect. | 4 | 1 |
| 801 | 36.44 | atmosphere | 1000.0 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 803 | 36.44 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 11 | 6 |
| 814 | 36.45 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 15 | 2 |
| 819 | 36.46 | atmosphere | 1000.0 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 820 | 36.46 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 14 | 3 |
| 856 | 36.47 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 910 | 36.51 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 8 | 13 |
| 917 | 36.52 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 13 | 3 |
| 936 | 36.54 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 22 | 1 |
| 983 | 36.57 | atmosphere | 1000.0 | 14400 | < th | dose dependent | rect. | 12 | 1 |
| 990 | 36.58 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 11 | 10 |
| 991 | 36.58 | temperature | 20.0 | 270 | > th | dose independent | rect. | 6 | 23 |