Os02g0679200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Tetratricopeptide-like helical domain containing protein.
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Os02g0679200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Tetratricopeptide-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 95.6 | 0.459 | 6.21 | 1.78 | 0.954 | 0.357 | -0.382 | 4.38 | 0.272 | 23.9 | 14.81 | 3306 | -- | -- |
| 107.14 | 0.486 | 6.35 | 0.828 | 1.05 | 0.856 | -0.238 | -- | 0.0796 | 0.246 | 29.56 | 4370 | -- | -- |
| 96.18 | 0.457 | 6.21 | 1.81 | 0.958 | 0.347 | -- | 4.37 | 0.277 | 23.9 | 14.3 | 3233 | -- | -- |
| 107.26 | 0.486 | 6.35 | 0.838 | 1.05 | 0.887 | -- | -- | 0.083 | 0.234 | 29.69 | 4383 | -- | -- |
| 151.95 | 0.574 | 6.22 | 1.68 | -- | 0.533 | -- | 3.89 | 0.213 | -- | 15.16 | 2438 | -- | -- |
| 113.83 | 0.5 | 6.36 | 0.877 | 0.973 | -- | -0.32 | -- | 0.0507 | 23.9 | -- | -- | -- | -- |
| 114.27 | 0.501 | 6.36 | 0.89 | 0.974 | -- | -- | -- | 0.0523 | 23.9 | -- | -- | -- | -- |
| 162.1 | 0.593 | 6.33 | 0.678 | -- | 0.673 | -- | -- | 0.0709 | -- | 25.49 | 3815 | -- | -- |
| 123.99 | 0.519 | 6.37 | -- | 0.932 | 0.596 | -- | -- | -0.0019 | 23.9 | 27.4 | 3465 | -- | -- |
| 174.01 | 0.616 | 6.33 | 0.919 | -- | -- | -- | -- | 0.0653 | -- | -- | -- | -- | -- |
| 135.13 | 0.544 | 6.38 | -- | 0.985 | -- | -- | -- | -0.0468 | 24 | -- | -- | -- | -- |
| 173.52 | 0.614 | 6.37 | -- | -- | 0.834 | -- | -- | -0.0906 | -- | 23.8 | 3809 | -- | -- |
| 196.3 | 0.654 | 6.36 | -- | -- | -- | -- | -- | -0.0367 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 96.00 | wind | 1 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 2 | 96.00 | temperature | 10 | 4320 | > th | dose dependent | rect. | 20 | 7 |
| 4 | 96.00 | temperature | 30 | 4320 | < th | dose dependent | rect. | 20 | 7 |
| 5 | 96.01 | temperature | 10 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 7 | 96.03 | temperature | 30 | 4320 | < th | dose dependent | rect. | 24 | 1 |
| 88 | 96.33 | temperature | 10 | 4320 | > th | dose dependent | rect. | 19 | 13 |
| 89 | 96.33 | temperature | 30 | 4320 | < th | dose dependent | rect. | 19 | 13 |
| 90 | 96.34 | temperature | 10 | 4320 | > th | dose dependent | sin | 10 | NA |
| 91 | 96.34 | temperature | 30 | 4320 | < th | dose dependent | sin | 10 | NA |
| 135 | 96.38 | temperature | 10 | 4320 | > th | dose dependent | rect. | 20 | 16 |
| 137 | 96.39 | temperature | 15 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 310 | 96.60 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 490 | 96.82 | wind | 7 | 4320 | > th | dose independent | rect. | 7 | 3 |
| 569 | 96.90 | wind | 1 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 575 | 96.90 | temperature | 25 | 4320 | < th | dose dependent | rect. | 11 | 20 |
| 653 | 96.98 | temperature | 15 | 4320 | > th | dose dependent | rect. | 11 | 20 |
| 879 | 97.22 | temperature | 30 | 4320 | < th | dose dependent | rect. | 6 | 1 |
| 889 | 97.23 | temperature | 10 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 936 | 97.27 | temperature | 15 | 4320 | > th | dose dependent | no | NA | NA |
| 969 | 97.31 | temperature | 25 | 4320 | < th | dose dependent | no | NA | NA |
| 999 | 97.34 | temperature | 15 | 4320 | > th | dose dependent | rect. | 23 | 23 |