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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0676600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF635 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.33 (0.0216) R2 : 0.0499
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.223 (0.0456) R2dN8 : 0.0644 R2N8 : 0.0499
σ : 0.408
deviance : 76.3
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
67.59 0.386 3.34 0.0217 0.344 -0.405 0.284 1.68 0.226 15.4 1.085 16 -- --
69.4 0.391 3.33 0.0905 0.332 -0.268 0.471 -- 0.245 15.3 1.088 13 -- --
67.83 0.384 3.34 0.0235 0.344 -0.406 -- 1.79 0.226 15.3 1.078 16 -- --
70.09 0.392 3.33 0.101 0.33 -0.256 -- -- 0.247 15.2 1.086 13 -- --
73.5 0.399 3.34 0.0431 -- -0.203 -- 1.64 0.225 -- 1.075 16 -- --
71.64 0.397 3.33 0.12 0.255 -- 0.397 -- 0.241 15.1 -- -- -- --
72.15 0.398 3.33 0.129 0.256 -- -- -- 0.243 14.9 -- -- -- --
74.41 0.404 3.33 0.0975 -- -0.242 -- -- 0.231 -- 0.8977 16 -- --
70.36 0.393 3.33 -- 0.331 -0.265 -- -- 0.236 15.2 1.099 13 -- --
75.93 0.407 3.33 0.118 -- -- -- -- 0.236 -- -- -- -- --
72.58 0.399 3.33 -- 0.254 -- -- -- 0.228 14.9 -- -- -- --
74.66 0.404 3.33 -- -- -0.25 -- -- 0.22 -- 0.8977 16 -- --
76.3 0.408 3.33 -- -- -- -- -- 0.223 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 61.80 wind 1.0 30 < th dose dependent rect. 10 17
2 61.81 wind 1.0 30 < th dose dependent rect. 12 15
5 62.21 wind 1.0 30 < th dose dependent rect. 23 4
7 62.43 wind 1.0 30 < th dose dependent rect. 21 6
17 62.69 wind 1.0 30 < th dose independent rect. 10 17
18 62.71 wind 1.0 30 < th dose independent rect. 12 15
24 62.99 wind 1.0 30 < th dose independent rect. 2 1
26 63.08 atmosphere 1005.0 30 > th dose independent rect. 2 1
27 63.08 wind 3.0 30 < th dose dependent rect. 2 1
30 63.12 wind 1.0 30 < th dose independent rect. 24 3
31 63.12 temperature 20.0 30 > th dose dependent rect. 2 1
33 63.14 temperature 20.0 30 > th dose independent rect. 2 1
38 63.17 atmosphere 1000.0 30 > th dose dependent rect. 2 1
51 63.28 humidity 90.0 30 > th dose independent rect. 2 1
52 63.28 wind 1.0 30 < th dose independent rect. 21 6
57 63.29 temperature 25.0 30 < th dose independent rect. 2 1
63 63.31 temperature 10.0 30 > th dose independent rect. 2 1
66 63.31 humidity 50.0 30 > th dose independent rect. 2 1
70 63.31 atmosphere 1010.0 30 < th dose independent rect. 2 1
72 63.31 radiation 1.0 30 < th dose independent rect. 2 1
77 63.31 precipitation 0.1 30 < th dose independent rect. 2 1
78 63.31 temperature 10.0 30 > th dose independent rect. 3 23
79 63.31 humidity 50.0 30 > th dose dependent rect. 2 1
81 63.31 radiation 1.0 30 < th dose dependent rect. 2 1
86 63.31 precipitation 0.1 30 < th dose dependent rect. 2 1
105 63.48 atmosphere 1000.0 10 > th dose independent rect. 3 23
108 63.56 atmosphere 1015.0 30 < th dose dependent rect. 2 1
111 63.63 temperature 30.0 30 < th dose dependent rect. 2 1
122 63.86 radiation 1.0 43200 < th dose dependent rect. 3 1
131 63.94 radiation 10.0 4320 < th dose dependent rect. 3 1
133 63.95 wind 9.0 1440 < th dose independent rect. 3 1
134 63.95 temperature 10.0 1440 > th dose independent rect. 3 1
137 63.95 temperature 30.0 1440 < th dose independent rect. 3 1
141 63.95 humidity 50.0 1440 > th dose independent rect. 3 1
150 63.95 atmosphere 995.0 1440 > th dose independent rect. 3 1
151 63.95 radiation 1.0 1440 < th dose independent rect. 3 1
171 63.95 temperature 10.0 1440 > th dose independent rect. 4 23
191 64.09 wind 1.0 30 > th dose independent rect. 2 1
234 64.68 precipitation 0.1 90 < th dose independent rect. 3 9
235 64.68 precipitation 0.1 90 < th dose dependent rect. 3 9
245 64.88 humidity 50.0 30 > th dose independent rect. 3 23
246 64.91 precipitation 0.1 10 < th dose independent rect. 3 23
247 64.91 precipitation 0.1 10 < th dose dependent rect. 3 23
248 64.93 temperature 15.0 90 > th dose independent rect. 3 9
250 64.95 temperature 25.0 10 > th dose independent sin 10 NA
253 64.98 wind 9.0 90 < th dose independent rect. 12 15
254 65.01 temperature 25.0 10 < th dose independent sin 9 NA
256 65.03 wind 9.0 30 < th dose independent rect. 3 23
266 65.21 atmosphere 995.0 90 > th dose independent rect. 3 9
267 65.21 atmosphere 1015.0 90 < th dose independent rect. 3 9
268 65.21 temperature 10.0 90 > th dose independent rect. 12 15
271 65.22 wind 9.0 90 < th dose independent rect. 3 9
276 65.27 wind 1.0 10 < th dose independent sin 17 NA
289 65.43 temperature 25.0 10 > th dose independent rect. 18 15
292 65.44 radiation 20.0 30 > th dose dependent sin 13 NA
294 65.45 radiation 40.0 90 < th dose dependent rect. 3 22
297 65.52 temperature 10.0 10 > th dose dependent rect. 12 16
305 65.58 temperature 10.0 90 > th dose dependent rect. 12 15
317 65.70 precipitation 0.1 90 < th dose independent rect. 12 15
320 65.70 precipitation 0.1 90 < th dose dependent rect. 12 15
378 65.87 radiation 20.0 30 > th dose independent sin 13 NA
389 65.89 atmosphere 1015.0 90 < th dose independent rect. 12 15
406 65.95 radiation 20.0 30 < th dose independent sin 13 NA
419 65.97 temperature 25.0 270 > th dose independent rect. 12 1
421 65.97 radiation 40.0 90 < th dose independent rect. 3 22
430 66.00 temperature 25.0 30 > th dose independent rect. 18 13
449 66.05 radiation 30.0 30 < th dose dependent rect. 11 14
453 66.07 radiation 20.0 30 > th dose independent rect. 12 20
458 66.08 radiation 20.0 90 < th dose independent rect. 15 10
459 66.08 temperature 25.0 10 > th dose independent rect. 16 17
462 66.10 temperature 25.0 90 > th dose independent rect. 12 5
475 66.16 radiation 40.0 90 < th dose independent rect. 3 9
485 66.19 radiation 20.0 30 > th dose independent rect. 12 5
543 66.27 temperature 20.0 270 > th dose dependent rect. 12 1
544 66.27 temperature 10.0 10 > th dose dependent rect. 4 8
548 66.28 temperature 20.0 30 > th dose dependent rect. 12 4
551 66.29 temperature 10.0 90 > th dose dependent rect. 3 9
559 66.31 radiation 10.0 90 > th dose dependent rect. 12 21
609 66.41 radiation 1.0 30 > th dose dependent rect. 12 7
628 66.45 temperature 30.0 90 < th dose independent rect. 3 22
638 66.48 radiation 40.0 90 < th dose dependent rect. 15 10
642 66.51 humidity 50.0 90 > th dose independent rect. 3 9
666 66.56 wind 1.0 30 > th dose independent rect. 3 23
675 66.58 wind 1.0 10 > th dose independent rect. 15 23
700 66.60 radiation 40.0 90 < th dose independent rect. 17 19
706 66.61 wind 1.0 30 < th dose dependent sin 17 NA
747 66.67 humidity 90.0 10 > th dose independent rect. 24 3
750 66.67 temperature 30.0 10 < th dose independent rect. 3 23
808 66.74 atmosphere 995.0 90 > th dose independent rect. 12 15
829 66.77 radiation 10.0 270 > th dose independent rect. 12 1
849 66.79 radiation 40.0 270 < th dose independent rect. 15 21
872 66.83 humidity 90.0 90 < th dose independent rect. 2 1
882 66.83 atmosphere 995.0 30 > th dose dependent rect. 4 8
883 66.83 wind 9.0 10 < th dose dependent rect. 12 16
901 66.86 radiation 20.0 30 < th dose independent rect. 11 14
932 66.90 atmosphere 1000.0 270 > th dose independent rect. 12 1
938 66.90 wind 1.0 10 > th dose independent rect. 16 20
953 66.91 radiation 40.0 30 < th dose dependent sin 15 NA
962 66.93 temperature 30.0 90 < th dose independent rect. 3 9
977 66.95 temperature 25.0 10 < th dose independent rect. 22 12