Os02g0676400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Multi antimicrobial extrusion protein MatE family protein.
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Os02g0676400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Multi antimicrobial extrusion protein MatE family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 120.19 | 0.515 | 2.77 | 0.0414 | 0.174 | -0.264 | -0.295 | -1.7 | 0.203 | 7.38 | 0.9002 | 4719 | -- | -- |
| 122.4 | 0.515 | 2.82 | 0.0645 | 0.197 | -0.191 | -0.178 | -- | 0.144 | 7.04 | -3.339 | 8607 | -- | -- |
| 120.37 | 0.511 | 2.77 | 0.0364 | 0.179 | -0.257 | -- | -1.63 | 0.2 | 6.81 | 0.9002 | 4699 | -- | -- |
| 122.4 | 0.515 | 2.82 | 0.0768 | 0.183 | -0.149 | -- | -- | 0.153 | 6.63 | -0.2278 | 6471 | -- | -- |
| 121.97 | 0.514 | 2.77 | 0.0325 | -- | -0.306 | -- | -1.65 | 0.205 | -- | 1.167 | 4769 | -- | -- |
| 122.6 | 0.519 | 2.82 | 0.151 | 0.197 | -- | -0.125 | -- | 0.137 | 6.91 | -- | -- | -- | -- |
| 122.63 | 0.519 | 2.82 | 0.148 | 0.198 | -- | -- | -- | 0.137 | 6.67 | -- | -- | -- | -- |
| 124.17 | 0.519 | 2.82 | 0.083 | -- | -0.19 | -- | -- | 0.178 | -- | 0.9974 | 6422 | -- | -- |
| 122.54 | 0.516 | 2.82 | -- | 0.187 | -0.194 | -- | -- | 0.172 | 6.22 | 0.9002 | 6547 | -- | -- |
| 124.67 | 0.522 | 2.83 | 0.153 | -- | -- | -- | -- | 0.141 | -- | -- | -- | -- | -- |
| 123.21 | 0.519 | 2.83 | -- | 0.2 | -- | -- | -- | 0.121 | 6.62 | -- | -- | -- | -- |
| 124.25 | 0.519 | 2.82 | -- | -- | -0.255 | -- | -- | 0.178 | -- | 0.7997 | 6415 | -- | -- |
| 125.28 | 0.522 | 2.83 | -- | -- | -- | -- | -- | 0.124 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 112.06 | temperature | 30.0 | 90 | > th | dose independent | rect. | 8 | 3 |
| 15 | 112.28 | temperature | 30.0 | 30 | > th | dose dependent | rect. | 9 | 1 |
| 168 | 113.07 | radiation | 1.0 | 10 | < th | dose independent | rect. | 5 | 2 |
| 186 | 114.67 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 5 | 2 |
| 202 | 115.96 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 4 | 4 |
| 205 | 115.98 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 4 | 4 |
| 208 | 115.99 | wind | 3.0 | 90 | > th | dose dependent | rect. | 5 | 2 |
| 210 | 116.10 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 5 | 13 |
| 212 | 116.10 | precipitation | 0.1 | 10 | > th | dose dependent | rect. | 5 | 13 |
| 218 | 116.12 | wind | 3.0 | 90 | > th | dose independent | rect. | 4 | 3 |
| 225 | 116.21 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 4 | 4 |
| 249 | 116.22 | wind | 3.0 | 10 | > th | dose dependent | rect. | 6 | 1 |
| 266 | 116.24 | wind | 3.0 | 10 | > th | dose independent | rect. | 6 | 1 |
| 374 | 116.59 | temperature | 30.0 | 30 | < th | dose independent | rect. | 10 | 1 |
| 398 | 116.85 | wind | 1.0 | 30 | < th | dose independent | rect. | 10 | 1 |
| 399 | 116.85 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 403 | 116.85 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 406 | 116.85 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 407 | 116.85 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 12 | 23 |
| 410 | 116.85 | wind | 1.0 | 30 | < th | dose dependent | rect. | 10 | 1 |
| 411 | 116.85 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 415 | 116.88 | wind | 5.0 | 30 | < th | dose dependent | rect. | 10 | 1 |
| 421 | 116.93 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 10 | 1 |
| 429 | 116.98 | humidity | 60.0 | 30 | > th | dose independent | rect. | 10 | 1 |
| 433 | 116.99 | temperature | 10.0 | 30 | > th | dose independent | rect. | 10 | 1 |
| 437 | 116.99 | humidity | 90.0 | 30 | < th | dose independent | rect. | 10 | 1 |
| 438 | 116.99 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 10 | 1 |
| 439 | 116.99 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 10 | 1 |
| 440 | 116.99 | radiation | 1.0 | 30 | > th | dose independent | rect. | 10 | 1 |
| 442 | 116.99 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 10 | 1 |
| 443 | 116.99 | temperature | 10.0 | 30 | > th | dose independent | rect. | 11 | 23 |
| 444 | 116.99 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 10 | 1 |
| 445 | 116.99 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 10 | 1 |
| 446 | 117.00 | wind | 1.0 | 30 | > th | dose independent | rect. | 10 | 1 |
| 448 | 117.00 | radiation | 40.0 | 30 | < th | dose independent | rect. | 10 | 1 |
| 449 | 117.00 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 10 | 1 |
| 456 | 117.04 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 10 | 1 |
| 461 | 117.09 | radiation | 40.0 | 30 | < th | dose dependent | rect. | 10 | 1 |
| 468 | 117.14 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 10 | 1 |
| 469 | 117.14 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 10 | 1 |
| 473 | 117.17 | humidity | 70.0 | 30 | < th | dose independent | rect. | 10 | 1 |
| 476 | 117.20 | radiation | 1.0 | 30 | > th | dose dependent | rect. | 10 | 1 |
| 523 | 117.65 | wind | 1.0 | 30 | > th | dose dependent | rect. | 10 | 1 |
| 616 | 118.16 | wind | 5.0 | 270 | > th | dose independent | rect. | 2 | 4 |
| 621 | 118.18 | wind | 5.0 | 270 | > th | dose dependent | rect. | 2 | 4 |
| 626 | 118.22 | precipitation | 0.1 | 10 | > th | dose independent | sin | 0 | NA |
| 627 | 118.22 | precipitation | 0.1 | 10 | > th | dose dependent | sin | 0 | NA |
| 632 | 118.23 | wind | 9.0 | 30 | < th | dose independent | rect. | 11 | 23 |
| 635 | 118.24 | precipitation | 0.1 | 10 | < th | dose independent | sin | 0 | NA |
| 636 | 118.24 | precipitation | 0.1 | 10 | < th | dose dependent | sin | 0 | NA |
| 796 | 118.68 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 24 | 7 |
| 814 | 118.71 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 24 | 6 |
| 837 | 118.80 | humidity | 90.0 | 90 | > th | dose independent | rect. | 22 | 2 |
| 859 | 118.91 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 11 | 23 |
| 909 | 119.06 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 11 | 23 |
| 913 | 119.06 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 918 | 119.08 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 22 | 2 |
| 948 | 119.13 | temperature | 30.0 | 90 | < th | dose independent | sin | 9 | NA |
| 966 | 119.21 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 5 | 6 |
| 982 | 119.27 | wind | 5.0 | 30 | > th | dose independent | rect. | 24 | 6 |
| 989 | 119.29 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 11 | 18 |
| 998 | 119.33 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 5 | 6 |