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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0673300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.01 (0.0131) R2 : 0.00319
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0333 (0.0276) R2dN8 : 0.00412 R2N8 : 0.00319
σ : 0.247
deviance : 27.92
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
24.75 0.234 3.02 0.0855 0.0954 1.43 0.163 2.99 -0.0203 11.4 17.08 660 -- --
26.46 0.24 3 0.108 0.115 0.0714 0.299 -- -0.013 10.9 21.97 3633 -- --
24.85 0.232 3.02 0.0901 0.0936 1.53 -- 3.24 -0.021 11.2 17.09 586 -- --
26.81 0.241 3 0.13 0.12 0.0791 -- -- -0.00557 11.5 22.15 6798 -- --
25.38 0.235 3.02 0.0885 -- 1.6 -- 3.33 -0.0166 -- 17.2 585 -- --
26.5 0.241 3 0.0723 0.119 -- 0.298 -- -0.0242 11.6 -- -- -- --
26.88 0.243 3 0.0842 0.117 -- -- -- -0.0231 11.5 -- -- -- --
27.6 0.246 3.01 0.0625 -- -0.102 -- -- -0.0379 -- 35.11 6827 -- --
26.99 0.242 3.01 -- 0.117 -0.0537 -- -- -0.0492 11.8 30.5 17484 -- --
27.75 0.246 3 0.081 -- -- -- -- -0.0243 -- -- -- -- --
27.07 0.243 3 -- 0.116 -- -- -- -0.0324 11.5 -- -- -- --
27.69 0.246 3.01 -- -- -0.117 -- -- -0.0472 -- 33.71 17496 -- --
27.92 0.247 3.01 -- -- -- -- -- -0.0333 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 24.62 humidity 90.0 1440 > th dose independent rect. 12 1
2 24.62 humidity 70.0 4320 > th dose independent rect. 21 1
3 24.62 humidity 90.0 1440 > th dose dependent rect. 12 1
4 24.69 temperature 20.0 1440 < th dose independent rect. 12 1
8 24.71 wind 9.0 4320 > th dose independent rect. 3 1
40 24.71 wind 9.0 4320 > th dose dependent rect. 3 1
74 24.74 temperature 20.0 1440 < th dose dependent rect. 12 1
79 24.77 temperature 20.0 1440 > th dose independent rect. 15 3
84 24.79 temperature 20.0 1440 > th dose independent rect. 17 1
87 24.79 temperature 20.0 1440 < th dose dependent rect. 19 1
88 24.81 temperature 20.0 1440 < th dose independent rect. 17 1
89 24.81 humidity 90.0 1440 < th dose independent rect. 12 1
100 24.83 wind 1.0 270 < th dose dependent rect. 8 1
102 24.86 temperature 20.0 1440 > th dose independent rect. 12 1
116 24.93 radiation 20.0 270 > th dose independent rect. 8 4
121 24.94 radiation 1.0 4320 < th dose dependent rect. 21 1
122 24.94 radiation 1.0 43200 < th dose dependent rect. 21 1
124 24.95 atmosphere 1005.0 270 < th dose independent rect. 11 1
130 24.96 temperature 20.0 1440 < th dose dependent rect. 12 8
140 25.01 temperature 20.0 720 < th dose dependent rect. 7 1
147 25.03 radiation 20.0 90 > th dose independent rect. 11 2
151 25.04 temperature 30.0 90 > th dose independent rect. 10 1
160 25.06 temperature 20.0 720 > th dose independent rect. 7 8
165 25.07 temperature 20.0 1440 < th dose dependent rect. 22 1
182 25.10 temperature 20.0 720 > th dose independent rect. 7 2
222 25.13 temperature 20.0 1440 < th dose dependent rect. 7 17
234 25.15 humidity 80.0 90 < th dose independent rect. 11 2
246 25.16 temperature 10.0 1440 > th dose independent rect. 21 1
249 25.16 temperature 30.0 1440 < th dose independent rect. 21 1
253 25.16 humidity 50.0 1440 > th dose independent rect. 21 1
260 25.16 atmosphere 995.0 1440 > th dose independent rect. 21 1
261 25.16 radiation 1.0 1440 < th dose independent rect. 21 1
284 25.16 temperature 10.0 1440 > th dose independent rect. 22 23
299 25.17 atmosphere 1005.0 30 > th dose dependent rect. 20 1
304 25.18 wind 3.0 30 > th dose independent rect. 20 1
305 25.18 wind 9.0 1440 < th dose independent rect. 21 1
306 25.18 temperature 25.0 30 > th dose independent rect. 20 1
307 25.18 humidity 80.0 30 > th dose independent rect. 20 1
308 25.18 atmosphere 1005.0 30 > th dose independent rect. 20 1
317 25.18 wind 3.0 10 < th dose dependent rect. 10 2
324 25.19 humidity 90.0 30 < th dose independent rect. 20 1
329 25.19 wind 1.0 30 > th dose dependent rect. 20 1
330 25.19 temperature 20.0 30 > th dose dependent rect. 20 1
339 25.20 wind 1.0 270 < th dose independent rect. 8 1
340 25.20 wind 5.0 30 < th dose independent rect. 20 1
343 25.20 temperature 10.0 30 > th dose independent rect. 20 1
346 25.20 temperature 30.0 30 < th dose independent rect. 20 1
347 25.20 humidity 50.0 30 > th dose independent rect. 20 1
350 25.20 atmosphere 995.0 30 > th dose independent rect. 20 1
352 25.20 atmosphere 1010.0 30 < th dose independent rect. 20 1
354 25.20 radiation 1.0 30 < th dose independent rect. 20 1
359 25.20 precipitation 0.1 30 < th dose independent rect. 20 1
363 25.20 temperature 10.0 30 > th dose independent rect. 21 23
364 25.20 temperature 10.0 30 > th dose dependent rect. 20 1
367 25.20 humidity 50.0 30 > th dose dependent rect. 20 1
370 25.20 radiation 1.0 30 < th dose dependent rect. 20 1
375 25.20 precipitation 0.1 30 < th dose dependent rect. 20 1
381 25.21 radiation 1.0 90 < th dose independent rect. 14 1
400 25.21 wind 9.0 30 < th dose dependent rect. 20 1
401 25.21 temperature 20.0 720 < th dose dependent rect. 24 1
402 25.21 radiation 1.0 90 < th dose dependent rect. 14 1
405 25.22 temperature 20.0 720 < th dose independent rect. 7 1
411 25.22 temperature 20.0 1440 < th dose dependent sin 20 NA
418 25.23 wind 9.0 30 < th dose independent rect. 21 23
425 25.24 humidity 80.0 90 < th dose independent rect. 9 4
440 25.24 temperature 30.0 30 < th dose dependent rect. 20 1
441 25.24 humidity 90.0 30 < th dose dependent rect. 20 1
455 25.25 atmosphere 1015.0 30 < th dose dependent rect. 20 1
456 25.25 radiation 40.0 14400 < th dose dependent rect. 21 1
483 25.28 wind 1.0 720 > th dose independent rect. 7 2
487 25.28 humidity 70.0 4320 > th dose independent rect. 21 7
493 25.29 wind 1.0 90 > th dose independent rect. 11 2
498 25.29 radiation 20.0 90 < th dose independent rect. 21 23
507 25.29 radiation 40.0 10 < th dose dependent rect. 21 23
509 25.30 atmosphere 1000.0 90 > th dose independent rect. 11 2
542 25.30 wind 3.0 4320 > th dose dependent rect. 2 2
552 25.31 temperature 30.0 90 > th dose independent rect. 10 3
558 25.31 atmosphere 1000.0 30 > th dose independent rect. 13 22
571 25.32 temperature 20.0 720 < th dose independent rect. 7 8
584 25.33 temperature 20.0 720 < th dose independent rect. 7 6
604 25.33 temperature 25.0 720 > th dose dependent rect. 6 2
606 25.33 radiation 1.0 270 > th dose dependent rect. 8 3
607 25.34 radiation 10.0 270 > th dose independent sin 7 NA
638 25.35 wind 9.0 43200 < th dose independent rect. 4 3
678 25.35 radiation 20.0 10 < th dose independent rect. 21 23
694 25.36 radiation 40.0 90 < th dose independent rect. 11 2
723 25.37 radiation 30.0 270 < th dose dependent sin 6 NA
731 25.38 humidity 80.0 43200 < th dose independent rect. 7 1
734 25.38 atmosphere 1000.0 30 > th dose independent rect. 13 7
746 25.39 radiation 20.0 10 > th dose independent rect. 11 3
752 25.39 radiation 30.0 90 < th dose independent rect. 13 22
758 25.39 wind 1.0 14400 < th dose dependent rect. 9 2
763 25.39 temperature 20.0 720 < th dose dependent rect. 24 9
767 25.40 radiation 20.0 90 > th dose independent sin 2 NA
775 25.40 wind 7.0 90 < th dose independent rect. 13 22
779 25.40 temperature 15.0 90 > th dose dependent rect. 11 2
781 25.40 atmosphere 995.0 10 > th dose dependent rect. 13 7
799 25.41 precipitation 0.1 1440 < th dose independent rect. 21 1
801 25.41 wind 9.0 4320 < th dose independent rect. 4 6
804 25.41 radiation 40.0 10 < th dose independent rect. 13 22
808 25.41 precipitation 0.1 1440 < th dose dependent rect. 21 1
820 25.42 wind 9.0 43200 > th dose independent rect. 4 3
831 25.42 temperature 20.0 1440 > th dose independent rect. 7 13
863 25.42 radiation 1.0 10 < th dose dependent rect. 20 21
868 25.43 radiation 20.0 90 < th dose independent sin 2 NA
887 25.43 radiation 30.0 90 < th dose independent rect. 3 8
895 25.43 humidity 80.0 90 < th dose independent rect. 24 13
900 25.43 radiation 20.0 90 < th dose independent rect. 3 16
907 25.43 temperature 20.0 720 < th dose dependent sin 2 NA
914 25.43 wind 9.0 43200 > th dose dependent rect. 4 3
924 25.43 wind 9.0 43200 > th dose dependent rect. 24 7
943 25.43 temperature 20.0 720 < th dose dependent rect. 6 22
950 25.44 wind 9.0 4320 < th dose independent rect. 5 1
952 25.44 atmosphere 1005.0 43200 < th dose independent rect. 20 1
955 25.44 wind 1.0 14400 < th dose independent rect. 9 2
968 25.44 radiation 1.0 270 < th dose independent rect. 8 5
978 25.44 radiation 40.0 10 < th dose independent rect. 13 7
999 25.44 temperature 20.0 720 < th dose dependent sin 0 NA