Os02g0672700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : DNA-directed RNA polymerase, subunit C11/M/9 family protein.
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Os02g0672700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : DNA-directed RNA polymerase, subunit C11/M/9 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 48.28 | 0.326 | 11.9 | -0.332 | 1.91 | -0.0341 | -1.25 | -2.28 | -0.2 | 22.1 | 9.918 | 1376 | -- | -- |
| 53.29 | 0.343 | 11.9 | -0.558 | 1.46 | 0.483 | -0.925 | -- | -0.238 | 21.6 | 9.918 | 1376 | -- | -- |
| 51.43 | 0.334 | 11.9 | -0.276 | 1.93 | -0.0313 | -- | -2.36 | -0.172 | 22.1 | 40 | 1578 | -- | -- |
| 54.57 | 0.344 | 11.9 | -0.568 | 1.92 | -0.491 | -- | -- | -0.367 | 22.2 | 2.773 | 11412 | -- | -- |
| 105.42 | 0.481 | 11.8 | -0.468 | -- | 1.3 | -- | -0.698 | -0.201 | -- | 2.625 | 2541 | -- | -- |
| 57.26 | 0.355 | 11.9 | -0.549 | 1.94 | -- | -0.872 | -- | -0.246 | 22.2 | -- | -- | -- | -- |
| 60.28 | 0.364 | 11.9 | -0.515 | 1.95 | -- | -- | -- | -0.244 | 22.2 | -- | -- | -- | -- |
| 100.93 | 0.47 | 11.8 | -0.524 | -- | 1.37 | -- | -- | -0.206 | -- | 6.491 | 6778 | -- | -- |
| 63.04 | 0.37 | 11.9 | -- | 1.95 | -0.436 | -- | -- | -0.294 | 22.3 | 8.887 | 10436 | -- | -- |
| 289.65 | 0.795 | 11.8 | -0.488 | -- | -- | -- | -- | -0.24 | -- | -- | -- | -- | -- |
| 67.28 | 0.384 | 11.9 | -- | 1.94 | -- | -- | -- | -0.187 | 22.2 | -- | -- | -- | -- |
| 108.17 | 0.486 | 11.8 | -- | -- | 1.36 | -- | -- | -0.148 | -- | 6.491 | 6778 | -- | -- |
| 295.93 | 0.803 | 11.8 | -- | -- | -- | -- | -- | -0.186 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 45.62 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 15 | 18 |
| 6 | 45.93 | radiation | 10.0 | 1440 | < th | dose dependent | sin | 12 | NA |
| 11 | 46.18 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 15 | 19 |
| 14 | 46.34 | radiation | 30.0 | 1440 | < th | dose dependent | rect. | 15 | 19 |
| 17 | 46.39 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 15 | 19 |
| 21 | 46.55 | radiation | 1.0 | 1440 | > th | dose dependent | sin | 11 | NA |
| 30 | 46.72 | radiation | 40.0 | 1440 | < th | dose dependent | sin | 11 | NA |
| 53 | 47.04 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 16 | 2 |
| 58 | 47.09 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 20 | 6 |
| 61 | 47.11 | radiation | 10.0 | 1440 | < th | dose independent | sin | 12 | NA |
| 62 | 47.13 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 15 | 3 |
| 63 | 47.13 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 14 | 5 |
| 65 | 47.16 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 21 | 4 |
| 66 | 47.17 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 99 | 47.35 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 22 | 1 |
| 102 | 47.36 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 103 | 47.37 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 14 | 12 |
| 106 | 47.38 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 13 | 13 |
| 119 | 47.42 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 4 | 19 |
| 132 | 47.46 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 14 | 11 |
| 135 | 47.47 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 17 | 8 |
| 149 | 47.49 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 21 | 3 |
| 168 | 47.51 | humidity | 80.0 | 14400 | > th | dose dependent | sin | 17 | NA |
| 175 | 47.53 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 195 | 47.59 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 14 | 4 |
| 200 | 47.59 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 5 | 19 |
| 223 | 47.63 | humidity | 90.0 | 14400 | < th | dose independent | sin | 16 | NA |
| 244 | 47.66 | radiation | 30.0 | 1440 | < th | dose independent | rect. | 15 | 19 |
| 262 | 47.71 | humidity | 90.0 | 14400 | > th | dose independent | sin | 15 | NA |
| 264 | 47.71 | radiation | 30.0 | 1440 | < th | dose independent | sin | 12 | NA |
| 309 | 47.76 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 312 | 47.76 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 332 | 47.78 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 340 | 47.78 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 17 | 2 |
| 363 | 47.82 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 13 | 2 |
| 394 | 47.85 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 3 | 7 |
| 431 | 47.91 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 439 | 47.92 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 21 | 4 |
| 507 | 47.98 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 22 | 2 |
| 510 | 47.98 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 4 | 6 |
| 552 | 48.02 | humidity | 80.0 | 14400 | > th | dose independent | sin | 19 | NA |
| 624 | 48.09 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 19 | 6 |
| 627 | 48.09 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 645 | 48.10 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 4 | 22 |
| 671 | 48.13 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 19 | 6 |
| 682 | 48.13 | radiation | 10.0 | 1440 | < th | dose dependent | sin | 6 | NA |
| 683 | 48.13 | temperature | 15.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 686 | 48.13 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 19 | 6 |
| 724 | 48.15 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 24 | 23 |
| 769 | 48.18 | humidity | 80.0 | 14400 | > th | dose dependent | no | NA | NA |
| 771 | 48.18 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 5 |
| 793 | 48.19 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 16 | 23 |
| 794 | 48.19 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 20 | 23 |
| 804 | 48.20 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 813 | 48.21 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 15 | 4 |
| 815 | 48.21 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 15 | 10 |
| 899 | 48.25 | radiation | 30.0 | 1440 | < th | dose dependent | rect. | 4 | 7 |
| 901 | 48.25 | radiation | 30.0 | 1440 | < th | dose dependent | rect. | 24 | 11 |
| 902 | 48.25 | radiation | 30.0 | 1440 | > th | dose dependent | rect. | 14 | 20 |
| 909 | 48.26 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 937 | 48.27 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 24 | 1 |
| 947 | 48.28 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 10 |
| 948 | 48.28 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 10 |
| 964 | 48.28 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 10 |