Os02g0672100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, C2H2-type domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os02g0672100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Zinc finger, C2H2-type domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 52.03 | 0.339 | 11.1 | 1.61 | 1.13 | -0.789 | -0.274 | 1.72 | 0.301 | 22.9 | 25.5 | 781 | -- | -- |
| 57.55 | 0.353 | 11.1 | 1.32 | 1.07 | -0.626 | -0.00666 | -- | 0.184 | 22.3 | 25.43 | 670 | -- | -- |
| 50.24 | 0.33 | 11.1 | 1.84 | 1.06 | -0.912 | -- | 2.86 | 0.272 | 23.3 | 26.53 | 1004 | -- | -- |
| 55.62 | 0.347 | 11.2 | 1.14 | 1.09 | -0.666 | -- | -- | 0.138 | 22.8 | 25.4 | 739 | -- | -- |
| 97.69 | 0.463 | 11.2 | 1.1 | -- | -0.4 | -- | 0.206 | 0.0263 | -- | 26.53 | 1004 | -- | -- |
| 70.24 | 0.393 | 11.2 | 0.936 | 0.82 | -- | 0.0518 | -- | -0.108 | 23.5 | -- | -- | -- | -- |
| 70.25 | 0.393 | 11.2 | 0.934 | 0.82 | -- | -- | -- | -0.108 | 23.5 | -- | -- | -- | -- |
| 80.16 | 0.419 | 11.1 | 1.22 | -- | -0.647 | -- | -- | 0.161 | -- | 23.45 | 5985 | -- | -- |
| 87.08 | 0.435 | 11.2 | -- | 1 | -0.426 | -- | -- | -0.0631 | 23.1 | 25.4 | 735 | -- | -- |
| 112.46 | 0.496 | 11.2 | 0.956 | -- | -- | -- | -- | -0.0994 | -- | -- | -- | -- | -- |
| 93.24 | 0.452 | 11.2 | -- | 0.83 | -- | -- | -- | -0.212 | 23.6 | -- | -- | -- | -- |
| 117.28 | 0.506 | 11.2 | -- | -- | -0.486 | -- | -- | -0.0318 | -- | 23.45 | 5985 | -- | -- |
| 136.56 | 0.545 | 11.2 | -- | -- | -- | -- | -- | -0.205 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 49.64 | temperature | 25 | 720 | > th | dose independent | rect. | 10 | 14 |
| 2 | 49.64 | temperature | 25 | 720 | < th | dose independent | rect. | 10 | 14 |
| 9 | 50.05 | temperature | 25 | 720 | > th | dose independent | sin | 18 | NA |
| 17 | 50.26 | temperature | 25 | 720 | < th | dose independent | sin | 19 | NA |
| 21 | 50.42 | temperature | 25 | 720 | > th | dose independent | rect. | 13 | 10 |
| 29 | 50.65 | temperature | 25 | 720 | < th | dose independent | rect. | 14 | 8 |
| 31 | 50.69 | temperature | 25 | 720 | < th | dose independent | rect. | 13 | 10 |
| 53 | 51.09 | temperature | 20 | 720 | > th | dose dependent | sin | 17 | NA |
| 60 | 51.25 | temperature | 25 | 720 | > th | dose dependent | sin | 15 | NA |
| 63 | 51.29 | temperature | 20 | 720 | > th | dose dependent | rect. | 11 | 15 |
| 88 | 51.55 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 8 |
| 94 | 51.63 | temperature | 30 | 720 | < th | dose dependent | rect. | 10 | 15 |
| 101 | 51.67 | temperature | 20 | 720 | > th | dose dependent | rect. | 13 | 12 |
| 111 | 51.71 | temperature | 30 | 720 | < th | dose dependent | sin | 18 | NA |
| 133 | 51.84 | temperature | 25 | 10 | < th | dose dependent | rect. | 11 | 21 |
| 155 | 51.92 | temperature | 25 | 90 | < th | dose dependent | rect. | 11 | 20 |
| 160 | 51.94 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 12 |
| 187 | 52.03 | temperature | 30 | 720 | < th | dose dependent | rect. | 14 | 8 |
| 199 | 52.07 | temperature | 25 | 10 | < th | dose dependent | rect. | 16 | 16 |
| 205 | 52.09 | temperature | 25 | 10 | < th | dose dependent | rect. | 14 | 18 |
| 217 | 52.13 | temperature | 25 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 247 | 52.22 | temperature | 20 | 10 | > th | dose dependent | sin | 13 | NA |
| 302 | 52.35 | temperature | 25 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 322 | 52.44 | temperature | 30 | 10 | < th | dose dependent | sin | 14 | NA |
| 341 | 52.50 | temperature | 25 | 720 | < th | dose independent | rect. | 5 | 19 |
| 353 | 52.52 | temperature | 25 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 355 | 52.53 | temperature | 25 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 363 | 52.55 | temperature | 25 | 10 | < th | dose dependent | no | NA | NA |
| 370 | 52.59 | temperature | 25 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 410 | 52.67 | temperature | 25 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 423 | 52.69 | temperature | 25 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 424 | 52.70 | temperature | 10 | 10 | > th | dose dependent | sin | 14 | NA |
| 447 | 52.74 | temperature | 25 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 777 | 53.52 | temperature | 25 | 10 | < th | dose dependent | rect. | 5 | 21 |
| 902 | 53.80 | temperature | 25 | 720 | > th | dose independent | rect. | 13 | 23 |
| 920 | 53.85 | temperature | 25 | 720 | > th | dose independent | no | NA | NA |
| 924 | 53.86 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 23 |