Os02g0671400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0671400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 106.32 | 0.484 | 7.35 | -1.36 | 2.11 | 3.27 | -1.73 | -11.3 | -0.0358 | 6.28 | 0.9201 | 249 | 4.08 | 0.315 |
| 118.8 | 0.508 | 7.25 | -0.431 | 2.14 | 2.34 | -1.66 | -- | 0.0917 | 6.19 | 0.9968 | 216 | 4.08 | 0.422 |
| 111.83 | 0.493 | 7.36 | -1.41 | 2.14 | 3.35 | -- | -13 | -0.0257 | 6.29 | 0.9829 | 333 | 4.12 | 0.342 |
| 125.06 | 0.521 | 7.23 | -0.634 | 2.14 | 2.61 | -- | -- | 0.0143 | 6.34 | 1.021 | 215 | 4.02 | 0.417 |
| 304.32 | 0.812 | 7.38 | -1.52 | -- | 4.76 | -- | -12.9 | 0.132 | -- | 1.06 | 341 | 4.1 | 0.337 |
| 184.61 | 0.637 | 7.27 | -0.519 | 2.62 | -- | -0.958 | -- | -0.136 | 6.13 | -- | -- | -- | -- |
| 186.87 | 0.64 | 7.27 | -0.529 | 2.61 | -- | -- | -- | -0.132 | 6.13 | -- | -- | -- | -- |
| 240.54 | 0.722 | 7.32 | -0.401 | -- | 2.21 | -- | -- | -0.0382 | -- | 7.8 | 249 | 3.7 | 0.423 |
| 132.4 | 0.536 | 7.24 | -- | 2.18 | 2.45 | -- | -- | 0.0361 | 6.32 | 1.067 | 212 | 4.07 | 0.218 |
| 541 | 1.09 | 7.32 | -0.455 | -- | -- | -- | -- | -0.0742 | -- | -- | -- | -- | -- |
| 194.24 | 0.652 | 7.26 | -- | 2.61 | -- | -- | -- | -0.0735 | 6.14 | -- | -- | -- | -- |
| 215.11 | 0.683 | 7.28 | -- | -- | 2 | -- | -- | -0.0755 | -- | 13.21 | 374 | 3.35 | 0.784 |
| 546.47 | 1.09 | 7.31 | -- | -- | -- | -- | -- | -0.0237 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 112.24 | temperature | 30 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 31 | 119.44 | temperature | 20 | 90 | > th | dose dependent | rect. | 3 | 3 |
| 33 | 119.80 | wind | 1 | 270 | < th | dose independent | rect. | 4 | 1 |
| 48 | 120.71 | temperature | 20 | 270 | > th | dose dependent | rect. | 1 | 5 |
| 49 | 120.74 | humidity | 70 | 720 | < th | dose independent | rect. | 19 | 12 |
| 51 | 120.87 | humidity | 70 | 720 | < th | dose independent | rect. | 19 | 1 |
| 63 | 121.05 | temperature | 30 | 720 | > th | dose independent | rect. | 18 | 1 |
| 80 | 121.85 | temperature | 20 | 270 | > th | dose dependent | rect. | 3 | 1 |
| 82 | 122.04 | humidity | 70 | 720 | < th | dose dependent | rect. | 19 | 12 |
| 83 | 122.09 | humidity | 70 | 720 | < th | dose dependent | rect. | 19 | 1 |
| 94 | 122.20 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 5 |
| 95 | 122.27 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 3 |
| 96 | 122.29 | wind | 1 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 112 | 122.55 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 115 | 122.69 | wind | 3 | 10 | < th | dose dependent | rect. | 3 | 6 |
| 129 | 123.89 | humidity | 50 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 130 | 123.90 | wind | 3 | 90 | < th | dose dependent | rect. | 3 | 4 |
| 134 | 124.32 | humidity | 70 | 1440 | > th | dose independent | rect. | 19 | 9 |
| 137 | 124.37 | humidity | 50 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 140 | 124.58 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 14 |
| 145 | 124.73 | humidity | 70 | 1440 | > th | dose independent | rect. | 19 | 1 |
| 146 | 124.74 | humidity | 70 | 1440 | > th | dose independent | rect. | 19 | 12 |
| 158 | 125.13 | temperature | 20 | 90 | > th | dose independent | rect. | 3 | 3 |
| 177 | 125.45 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 11 |
| 273 | 127.73 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 1 |
| 286 | 128.50 | temperature | 20 | 270 | > th | dose independent | rect. | 1 | 5 |
| 326 | 129.05 | temperature | 20 | 10 | > th | dose independent | rect. | 3 | 4 |
| 331 | 129.11 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 391 | 130.23 | temperature | 30 | 1440 | > th | dose dependent | sin | 12 | NA |
| 596 | 133.27 | temperature | 30 | 1440 | < th | dose independent | sin | 11 | NA |
| 641 | 133.60 | temperature | 30 | 1440 | > th | dose independent | sin | 12 | NA |
| 732 | 134.43 | temperature | 30 | 1440 | > th | dose dependent | no | NA | NA |
| 923 | 135.33 | humidity | 90 | 90 | > th | dose independent | rect. | 4 | 1 |
| 978 | 135.59 | humidity | 90 | 90 | > th | dose dependent | rect. | 3 | 2 |