Os02g0671100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF295 family protein.
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Os02g0671100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF295 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 185.46 | 0.64 | 8.54 | 1.14 | 0.463 | -3.06 | -1.97 | 6.05 | 0.694 | 1.26 | 22.85 | 888 | -- | -- |
| 202.61 | 0.663 | 8.7 | -0.174 | 0.676 | -2.52 | -1.44 | -- | 0.314 | 3.19 | 22.99 | 945 | -- | -- |
| 199.31 | 0.658 | 8.55 | 1.11 | 0.533 | -3 | -- | 5.59 | 0.672 | 2.19 | 23.14 | 920 | -- | -- |
| 208.14 | 0.672 | 8.69 | -0.18 | 0.62 | -2.42 | -- | -- | 0.34 | 3.68 | 22.92 | 981 | -- | -- |
| 211.84 | 0.678 | 8.58 | 0.759 | -- | -2.79 | -- | 4.47 | 0.559 | -- | 22.9 | 850 | -- | -- |
| 361.59 | 0.891 | 8.78 | -0.906 | 0.702 | -- | 0.999 | -- | -0.0999 | 8.09 | -- | -- | -- | -- |
| 363.34 | 0.893 | 8.78 | -0.883 | 0.729 | -- | -- | -- | -0.104 | 7.32 | -- | -- | -- | -- |
| 222.04 | 0.694 | 8.7 | -0.208 | -- | -2.42 | -- | -- | 0.308 | -- | 22.7 | 863 | -- | -- |
| 208.89 | 0.673 | 8.69 | -- | 0.616 | -2.44 | -- | -- | 0.335 | 3.76 | 22.96 | 990 | -- | -- |
| 391.55 | 0.925 | 8.79 | -0.871 | -- | -- | -- | -- | -0.0921 | -- | -- | -- | -- | -- |
| 383.91 | 0.917 | 8.75 | -- | 0.72 | -- | -- | -- | -0.00589 | 7.4 | -- | -- | -- | -- |
| 223.12 | 0.696 | 8.7 | -- | -- | -2.47 | -- | -- | 0.335 | -- | 22.7 | 869 | -- | -- |
| 411.56 | 0.947 | 8.77 | -- | -- | -- | -- | -- | 0.00453 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 189.42 | temperature | 20 | 720 | > th | dose dependent | rect. | 9 | 16 |
| 4 | 189.67 | temperature | 20 | 720 | > th | dose dependent | sin | 18 | NA |
| 28 | 194.47 | temperature | 25 | 720 | > th | dose independent | rect. | 7 | 17 |
| 30 | 194.73 | temperature | 10 | 720 | > th | dose dependent | rect. | 9 | 15 |
| 31 | 194.75 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 16 |
| 39 | 195.85 | temperature | 25 | 720 | < th | dose independent | rect. | 7 | 17 |
| 41 | 195.97 | temperature | 30 | 720 | < th | dose dependent | sin | 19 | NA |
| 53 | 196.57 | radiation | 20 | 1440 | < th | dose dependent | rect. | 18 | 2 |
| 140 | 200.79 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 7 |
| 198 | 202.88 | humidity | 70 | 14400 | < th | dose independent | rect. | 19 | 2 |
| 257 | 204.42 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 7 |
| 265 | 204.58 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 9 |
| 320 | 205.28 | humidity | 70 | 14400 | < th | dose dependent | rect. | 18 | 13 |
| 333 | 205.36 | temperature | 30 | 720 | < th | dose dependent | rect. | 14 | 9 |
| 355 | 205.55 | humidity | 70 | 14400 | < th | dose dependent | rect. | 18 | 4 |
| 364 | 205.56 | temperature | 25 | 720 | > th | dose independent | sin | 20 | NA |
| 372 | 205.66 | temperature | 15 | 1440 | > th | dose dependent | rect. | 16 | 3 |
| 405 | 205.98 | temperature | 20 | 720 | > th | dose dependent | no | NA | NA |
| 407 | 206.01 | temperature | 10 | 1440 | > th | dose dependent | sin | 22 | NA |
| 425 | 206.16 | temperature | 15 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 441 | 206.37 | wind | 5 | 43200 | > th | dose independent | rect. | 5 | 11 |
| 461 | 206.53 | wind | 5 | 43200 | > th | dose independent | rect. | 7 | 9 |
| 470 | 206.60 | wind | 5 | 43200 | < th | dose independent | rect. | 5 | 11 |
| 497 | 206.80 | wind | 5 | 43200 | > th | dose independent | rect. | 9 | 6 |
| 508 | 206.91 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 6 |
| 521 | 207.06 | radiation | 10 | 14400 | > th | dose dependent | rect. | 17 | 13 |
| 534 | 207.23 | wind | 5 | 43200 | < th | dose independent | rect. | 7 | 9 |
| 541 | 207.29 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 13 |
| 544 | 207.31 | wind | 5 | 43200 | > th | dose dependent | rect. | 11 | 19 |
| 558 | 207.40 | temperature | 20 | 720 | > th | dose dependent | rect. | 16 | 23 |
| 578 | 207.51 | wind | 5 | 43200 | > th | dose independent | sin | 1 | NA |
| 588 | 207.59 | temperature | 25 | 720 | < th | dose independent | sin | 20 | NA |
| 597 | 207.62 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 6 |
| 603 | 207.64 | wind | 5 | 43200 | > th | dose independent | rect. | 3 | 19 |
| 612 | 207.68 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 21 |
| 635 | 207.86 | wind | 5 | 43200 | > th | dose independent | rect. | 5 | 17 |
| 650 | 207.92 | wind | 5 | 43200 | > th | dose independent | rect. | 7 | 16 |
| 701 | 208.17 | wind | 3 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 705 | 208.20 | wind | 5 | 43200 | < th | dose independent | rect. | 19 | 22 |
| 707 | 208.22 | wind | 5 | 43200 | < th | dose independent | sin | 2 | NA |
| 736 | 208.36 | wind | 5 | 43200 | > th | dose independent | rect. | 20 | 22 |
| 780 | 208.58 | wind | 5 | 43200 | < th | dose independent | rect. | 24 | 17 |
| 788 | 208.60 | wind | 5 | 43200 | > th | dose independent | rect. | 3 | 22 |
| 799 | 208.65 | wind | 5 | 43200 | > th | dose independent | rect. | 24 | 22 |
| 803 | 208.68 | wind | 5 | 43200 | > th | dose independent | rect. | 24 | 17 |
| 804 | 208.69 | wind | 5 | 43200 | < th | dose independent | rect. | 3 | 19 |
| 880 | 208.91 | wind | 5 | 43200 | > th | dose dependent | sin | 19 | NA |
| 914 | 209.05 | wind | 5 | 43200 | > th | dose independent | rect. | 8 | 22 |