Os02g0670400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to HMGc1 protein.
FiT-DB / Search/ Help/ Sample detail
|
Os02g0670400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to HMGc1 protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 94.34 | 0.456 | 10.8 | -0.292 | 1.33 | -1.48 | 0.596 | 0.0746 | -0.106 | 9.87 | 66.16 | 848 | -- | -- |
| 94.31 | 0.452 | 10.8 | -0.282 | 1.32 | -1.48 | 0.631 | -- | -0.104 | 9.91 | 66.7 | 855 | -- | -- |
| 95.21 | 0.454 | 10.8 | -0.309 | 1.33 | -1.49 | -- | 0.573 | -0.119 | 9.95 | 67.18 | 856 | -- | -- |
| 95.78 | 0.456 | 10.8 | -0.252 | 1.32 | -1.47 | -- | -- | -0.113 | 9.94 | 67.81 | 855 | -- | -- |
| 131.84 | 0.535 | 10.9 | -0.388 | -- | -0.983 | -- | 0.793 | -0.0629 | -- | 54.77 | 1492 | -- | -- |
| 125.98 | 0.526 | 10.8 | -0.265 | 0.672 | -- | 0.487 | -- | 0.0103 | 10.4 | -- | -- | -- | -- |
| 126.94 | 0.528 | 10.8 | -0.246 | 0.669 | -- | -- | -- | 0.0117 | 10.4 | -- | -- | -- | -- |
| 132.35 | 0.536 | 10.9 | -0.251 | -- | -1.11 | -- | -- | -0.105 | -- | 66.01 | 1490 | -- | -- |
| 97.41 | 0.46 | 10.8 | -- | 1.32 | -1.47 | -- | -- | -0.0918 | 9.96 | 69 | 855 | -- | -- |
| 154.33 | 0.58 | 10.8 | -0.257 | -- | -- | -- | -- | 0.00925 | -- | -- | -- | -- | -- |
| 128.53 | 0.53 | 10.8 | -- | 0.67 | -- | -- | -- | 0.0391 | 10.5 | -- | -- | -- | -- |
| 133.97 | 0.539 | 10.9 | -- | -- | -1.14 | -- | -- | -0.0804 | -- | 66.41 | 1499 | -- | -- |
| 156.07 | 0.583 | 10.8 | -- | -- | -- | -- | -- | 0.0378 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 89.38 | humidity | 80 | 720 | > th | dose dependent | rect. | 10 | 14 |
| 2 | 89.62 | humidity | 90 | 720 | > th | dose dependent | rect. | 17 | 7 |
| 7 | 89.92 | humidity | 70 | 720 | > th | dose dependent | sin | 17 | NA |
| 17 | 90.40 | humidity | 70 | 720 | > th | dose dependent | rect. | 14 | 10 |
| 27 | 90.57 | humidity | 70 | 720 | > th | dose dependent | rect. | 13 | 12 |
| 61 | 91.22 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 72 | 91.45 | radiation | 1 | 720 | < th | dose dependent | rect. | 6 | 20 |
| 81 | 91.73 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 21 |
| 98 | 92.10 | humidity | 80 | 720 | > th | dose independent | rect. | 11 | 11 |
| 113 | 92.39 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 10 |
| 136 | 92.50 | humidity | 70 | 720 | > th | dose dependent | rect. | 11 | 19 |
| 153 | 92.72 | radiation | 1 | 720 | < th | dose dependent | rect. | 6 | 13 |
| 154 | 92.73 | humidity | 80 | 720 | > th | dose dependent | rect. | 5 | 19 |
| 159 | 92.79 | humidity | 70 | 720 | > th | dose dependent | rect. | 11 | 21 |
| 168 | 92.88 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 19 |
| 173 | 92.94 | humidity | 80 | 720 | < th | dose independent | rect. | 11 | 10 |
| 179 | 92.96 | radiation | 1 | 720 | < th | dose dependent | rect. | 14 | 12 |
| 182 | 92.99 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 19 |
| 215 | 93.29 | humidity | 80 | 720 | > th | dose independent | sin | 19 | NA |
| 230 | 93.38 | radiation | 1 | 720 | < th | dose independent | rect. | 7 | 19 |
| 232 | 93.40 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 2 |
| 244 | 93.47 | radiation | 1 | 720 | > th | dose independent | sin | 21 | NA |
| 261 | 93.53 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 14 |
| 264 | 93.55 | radiation | 1 | 720 | < th | dose dependent | rect. | 14 | 4 |
| 319 | 93.89 | radiation | 1 | 720 | < th | dose independent | rect. | 14 | 12 |
| 333 | 93.93 | humidity | 80 | 1440 | < th | dose independent | rect. | 3 | 14 |
| 337 | 93.95 | humidity | 80 | 1440 | < th | dose independent | rect. | 5 | 12 |
| 350 | 94.01 | humidity | 80 | 720 | < th | dose independent | rect. | 13 | 8 |
| 357 | 94.06 | humidity | 80 | 1440 | < th | dose independent | rect. | 1 | 16 |
| 372 | 94.17 | radiation | 1 | 720 | < th | dose dependent | sin | 20 | NA |
| 388 | 94.23 | humidity | 90 | 720 | > th | dose independent | rect. | 17 | 7 |
| 391 | 94.24 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 408 | 94.27 | humidity | 80 | 720 | < th | dose independent | sin | 19 | NA |
| 436 | 94.36 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 11 |
| 438 | 94.36 | humidity | 80 | 1440 | > th | dose independent | rect. | 3 | 14 |
| 459 | 94.40 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 10 |
| 497 | 94.45 | humidity | 80 | 720 | > th | dose independent | rect. | 11 | 15 |
| 509 | 94.48 | radiation | 1 | 720 | < th | dose dependent | rect. | 20 | 23 |
| 514 | 94.52 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 8 |
| 561 | 94.59 | humidity | 90 | 720 | > th | dose independent | rect. | 9 | 15 |
| 594 | 94.66 | humidity | 80 | 1440 | < th | dose independent | sin | 2 | NA |
| 602 | 94.69 | radiation | 1 | 720 | < th | dose independent | sin | 21 | NA |
| 618 | 94.75 | radiation | 1 | 1440 | < th | dose independent | sin | 16 | NA |
| 622 | 94.76 | radiation | 1 | 720 | < th | dose independent | rect. | 14 | 4 |
| 650 | 94.81 | humidity | 70 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 688 | 94.94 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 18 |
| 844 | 95.21 | radiation | 1 | 720 | < th | dose independent | rect. | 20 | 23 |
| 935 | 95.44 | humidity | 80 | 720 | > th | dose independent | rect. | 5 | 17 |
| 947 | 95.48 | humidity | 70 | 720 | > th | dose dependent | no | NA | NA |
| 952 | 95.49 | humidity | 80 | 1440 | > th | dose independent | sin | 1 | NA |
| 965 | 95.51 | radiation | 1 | 720 | > th | dose independent | rect. | 16 | 14 |