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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0670100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Protein kinase APK1A, chloroplast precursor (EC 2.7.1.-).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.46 (0.0412) R2 : 0.438
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.37 (0.125) R2dC : 0.203 R2C : 0.343
β3 : -1.41 (0.188) R2dE : 0.0993 R2E : 0.228
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.133 (0.09) R2dN8 : 0.00379 R2N8 : -0.00471
σ : 0.768
deviance : 271.7
__
_____
C
peak time of C : 5.38
E
wheather : temperature
threshold : 18.3
memory length : 234
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
262.5 0.761 4.38 0.667 1.33 -1.56 0.925 3.89 0.336 5.59 19.93 221 -- --
271.67 0.768 4.46 -0.0244 1.37 -1.41 -0.0278 -- 0.132 5.38 18.31 236 -- --
264.01 0.757 4.4 0.526 1.33 -1.53 -- 3.19 0.292 5.43 19.77 221 -- --
271.68 0.768 4.46 -0.0317 1.37 -1.39 -- -- 0.132 5.37 18.4 234 -- --
318.33 0.831 4.37 0.815 -- -2.68 -- 4.66 0.437 -- 23.5 253 -- --
300.44 0.813 4.51 -0.366 1.86 -- -0.015 -- -0.106 5.12 -- -- -- --
300.44 0.812 4.51 -0.366 1.86 -- -- -- -0.106 5.12 -- -- -- --
333.77 0.851 4.47 0.114 -- -2.28 -- -- 0.215 -- 23.46 262 -- --
271.7 0.768 4.46 -- 1.37 -1.41 -- -- 0.133 5.38 18.3 234 -- --
480.85 1.02 4.53 -0.3 -- -- -- -- -0.0588 -- -- -- -- --
303.96 0.816 4.5 -- 1.85 -- -- -- -0.0651 5.13 -- -- -- --
334.05 0.851 4.47 -- -- -2.27 -- -- 0.201 -- 23.54 263 -- --
483.22 1.03 4.52 -- -- -- -- -- -0.0256 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 248.47 temperature 20 30 > th dose dependent rect. 8 21
5 249.65 temperature 10 270 > th dose dependent rect. 7 20
9 250.72 temperature 10 270 > th dose dependent rect. 23 16
13 251.70 temperature 30 90 < th dose independent rect. 5 8
21 253.68 temperature 30 270 < th dose dependent rect. 15 19
47 255.66 humidity 90 14400 < th dose independent rect. 18 1
60 256.25 temperature 10 270 > th dose dependent rect. 7 10
64 256.51 humidity 90 14400 > th dose dependent rect. 22 1
66 256.51 temperature 30 270 < th dose dependent rect. 3 19
81 257.11 temperature 30 90 < th dose independent rect. 5 14
98 257.85 humidity 90 14400 < th dose independent rect. 21 1
100 257.99 temperature 20 270 > th dose dependent rect. 20 20
106 258.25 radiation 1 30 > th dose independent sin 6 NA
128 258.86 temperature 30 90 < th dose dependent rect. 5 20
131 258.95 humidity 90 14400 < th dose independent rect. 16 6
140 259.12 humidity 90 14400 < th dose independent rect. 13 10
141 259.13 humidity 90 14400 < th dose independent rect. 14 8
151 259.25 temperature 30 270 < th dose dependent rect. 3 8
153 259.26 humidity 80 14400 > th dose dependent rect. 17 1
162 259.41 humidity 90 14400 < th dose independent rect. 10 13
164 259.47 wind 9 14400 > th dose independent rect. 20 15
172 259.61 humidity 90 14400 > th dose dependent rect. 13 11
175 259.63 temperature 30 90 < th dose dependent rect. 5 18
210 260.03 wind 9 14400 < th dose independent rect. 20 15
212 260.07 humidity 90 14400 < th dose independent sin 18 NA
218 260.20 wind 9 14400 > th dose dependent rect. 20 15
231 260.25 temperature 30 90 < th dose independent rect. 5 18
236 260.31 radiation 10 43200 > th dose independent rect. 9 1
237 260.31 humidity 90 14400 > th dose independent rect. 21 2
253 260.51 humidity 90 14400 > th dose dependent rect. 4 19
266 260.62 temperature 25 270 < th dose independent rect. 14 21
277 260.70 humidity 90 14400 > th dose independent rect. 13 10
279 260.71 humidity 90 43200 < th dose independent rect. 13 2
281 260.71 wind 1 43200 < th dose dependent rect. 1 1
292 260.78 humidity 90 14400 < th dose independent rect. 2 20
313 260.88 humidity 90 14400 > th dose independent rect. 10 13
316 260.91 humidity 90 14400 > th dose dependent sin 18 NA
357 261.22 temperature 30 90 < th dose independent rect. 5 20
360 261.24 humidity 90 14400 < th dose independent rect. 7 20
381 261.35 wind 1 43200 > th dose independent rect. 8 1
385 261.36 humidity 90 14400 < th dose independent rect. 7 22
394 261.42 temperature 10 270 > th dose dependent rect. 20 22
405 261.46 humidity 90 14400 > th dose independent rect. 2 21
408 261.49 humidity 90 14400 > th dose independent sin 18 NA
414 261.51 humidity 90 14400 < th dose independent rect. 10 1
459 261.71 humidity 90 14400 > th dose independent rect. 9 2
471 261.85 atmosphere 1000 43200 < th dose dependent rect. 11 5
473 261.86 radiation 10 43200 < th dose dependent rect. 9 1
477 261.88 radiation 1 90 < th dose dependent sin 8 NA
485 261.93 wind 1 43200 > th dose dependent rect. 6 1
490 261.95 humidity 90 14400 > th dose independent rect. 4 19
491 261.96 humidity 90 14400 > th dose independent rect. 18 1
496 261.98 radiation 1 30 < th dose independent sin 6 NA
527 262.12 atmosphere 995 43200 < th dose dependent rect. 15 7
536 262.16 humidity 90 14400 > th dose independent rect. 8 19
537 262.16 atmosphere 1000 43200 < th dose dependent rect. 13 2
546 262.20 atmosphere 995 43200 > th dose independent rect. 13 9
554 262.22 atmosphere 1000 43200 < th dose independent rect. 11 1
556 262.24 atmosphere 1000 43200 > th dose independent rect. 11 1
560 262.24 wind 3 43200 < th dose dependent rect. 8 1
575 262.29 humidity 90 43200 > th dose independent rect. 13 2
576 262.29 atmosphere 995 43200 < th dose independent rect. 14 8
604 262.39 wind 9 43200 < th dose dependent rect. 6 1
636 262.52 temperature 25 270 < th dose independent rect. 3 21
671 262.69 atmosphere 1000 43200 < th dose independent rect. 6 1
672 262.69 atmosphere 1000 43200 > th dose independent rect. 5 2
699 262.74 humidity 90 14400 < th dose independent rect. 4 23
710 262.80 temperature 20 270 > th dose dependent sin 3 NA
713 262.82 wind 3 43200 > th dose independent rect. 6 1
721 262.84 atmosphere 1000 43200 < th dose independent rect. 4 8
722 262.84 atmosphere 995 43200 > th dose independent rect. 12 11
728 262.85 humidity 90 14400 < th dose independent rect. 12 23
752 262.92 atmosphere 1000 43200 > th dose independent rect. 5 7
782 262.98 humidity 90 14400 < th dose independent rect. 16 23
806 263.04 temperature 20 1440 > th dose dependent rect. 7 2
807 263.04 wind 3 43200 < th dose dependent rect. 6 4
810 263.05 humidity 90 14400 < th dose independent rect. 16 19
817 263.07 humidity 90 14400 < th dose independent no NA NA
829 263.09 temperature 25 270 > th dose independent rect. 22 20
902 263.26 humidity 90 14400 < th dose independent rect. 10 23
915 263.30 radiation 1 14400 > th dose independent rect. 4 2
956 263.36 temperature 20 90 > th dose dependent rect. 8 13
961 263.38 radiation 1 14400 < th dose independent rect. 19 11
1000 263.48 humidity 90 14400 > th dose independent rect. 4 23