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Os02g0669500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF241, plant family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.2 (0.0425) R2 : 0.592
β1 : 1.35 (0.156) R2dD : 0.07 R2D : 0.047
β2 : 2.29 (0.111) R2dC : 0.389 R2C : 0.424
β3 : 2.24 (0.201) R2dE : 0.112 R2E : 0.124
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.216 (0.0906) R2dN8 : 0.00682 R2N8 : -0.00317
σ : 0.794
deviance : 290.36
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_____
C
peak time of C : 6.81
E
wheather : radiation
threshold : 2.793
memory length : 185
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 18.3
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
289.9 0.8 10.2 1.36 2.22 2.29 -0.284 0.639 0.215 6.83 2.629 195 18.4 --
290.26 0.793 10.2 1.36 2.26 2.26 -0.311 -- 0.218 6.81 2.76 191 18.4 --
290.04 0.793 10.2 1.34 2.26 2.29 -- 0.708 0.215 6.83 2.744 194 18.4 --
290.36 0.794 10.2 1.35 2.29 2.24 -- -- 0.216 6.81 2.793 185 18.3 --
312.46 0.823 10.3 1.34 -- 3.15 -- 0.467 0.2 -- 1.726 432 22.1 --
360.91 0.891 10.2 1.21 2.44 -- -0.0989 -- 0.175 6.24 -- -- -- --
360.93 0.89 10.2 1.21 2.44 -- -- -- 0.175 6.24 -- -- -- --
312.28 0.823 10.3 1.34 -- 3.11 -- -- 0.197 -- 1.434 447 22.6 --
335.44 0.853 10.2 -- 2.44 1.71 -- -- 0.0407 6.54 6.192 172 18.2 --
668.57 1.21 10.2 1.27 -- -- -- -- 0.229 -- -- -- -- --
399.34 0.935 10.2 -- 2.45 -- -- -- 0.041 6.22 -- -- -- --
360.3 0.884 10.3 -- -- 2.97 -- -- 0.171 -- 2.188 444 23.4 --
711.35 1.24 10.3 -- -- -- -- -- 0.0874 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 279.63 humidity 60.0 90 > th dose dependent rect. 4 17
5 283.16 temperature 30.0 90 < th dose dependent rect. 4 17
9 285.24 humidity 60.0 10 > th dose dependent rect. 5 16
12 286.97 radiation 40.0 1440 < th dose dependent rect. 22 7
15 287.45 temperature 30.0 10 < th dose dependent rect. 5 16
17 287.87 humidity 50.0 270 > th dose dependent rect. 1 19
25 289.34 radiation 40.0 4320 < th dose dependent rect. 24 5
26 289.76 humidity 50.0 270 > th dose independent rect. 15 15
29 290.06 humidity 60.0 10 > th dose dependent rect. 5 18
30 290.42 radiation 40.0 270 < th dose dependent rect. 15 15
36 291.04 radiation 10.0 270 < th dose dependent rect. 1 19
37 291.08 humidity 70.0 90 > th dose independent rect. 4 17
44 291.84 radiation 10.0 90 < th dose dependent rect. 4 17
50 292.06 radiation 1.0 270 < th dose independent rect. 3 16
51 292.08 radiation 20.0 270 < th dose independent rect. 15 15
69 293.37 radiation 1.0 270 > th dose independent sin 1 NA
81 294.06 radiation 1.0 270 > th dose independent rect. 6 10
83 294.12 radiation 1.0 270 < th dose independent sin 1 NA
89 294.55 radiation 10.0 90 < th dose dependent rect. 4 19
93 294.73 radiation 1.0 270 < th dose independent rect. 2 18
97 295.12 radiation 1.0 270 < th dose dependent sin 1 NA
113 296.09 temperature 30.0 270 < th dose dependent rect. 1 19
114 296.12 temperature 10.0 270 > th dose dependent rect. 8 17
119 296.40 humidity 50.0 270 > th dose dependent rect. 15 15
139 297.41 temperature 10.0 90 > th dose dependent rect. 8 20
143 297.61 humidity 50.0 270 > th dose independent rect. 1 19
156 298.18 wind 5.0 90 < th dose independent rect. 21 7
158 298.22 humidity 50.0 90 > th dose dependent rect. 17 15
177 298.73 radiation 1.0 270 > th dose independent rect. 18 22
198 299.41 temperature 25.0 90 < th dose independent rect. 4 17
210 299.67 temperature 10.0 270 > th dose dependent rect. 6 20
228 300.14 humidity 50.0 270 > th dose dependent rect. 14 6
255 300.93 humidity 50.0 270 > th dose dependent rect. 15 4
263 301.07 temperature 10.0 1440 > th dose independent rect. 22 7
266 301.07 temperature 30.0 1440 < th dose independent rect. 22 7
270 301.07 humidity 50.0 1440 > th dose independent rect. 22 7
277 301.07 atmosphere 995.0 1440 > th dose independent rect. 22 7
278 301.07 radiation 20.0 1440 < th dose independent rect. 22 7
290 301.07 temperature 10.0 1440 > th dose independent rect. 5 17
297 301.21 temperature 30.0 270 < th dose independent rect. 15 15
303 301.31 humidity 70.0 270 > th dose independent rect. 1 19
336 301.79 radiation 10.0 1440 < th dose independent rect. 24 5
338 301.86 temperature 10.0 270 > th dose dependent rect. 6 9
344 302.08 humidity 60.0 270 > th dose independent rect. 15 4
361 302.44 radiation 10.0 270 < th dose dependent rect. 22 23
365 302.50 humidity 70.0 270 > th dose independent rect. 17 2
368 302.53 radiation 1.0 270 > th dose independent rect. 4 12
398 302.88 radiation 1.0 90 > th dose independent sin 23 NA
419 303.43 atmosphere 995.0 270 > th dose independent rect. 16 14
423 303.51 radiation 1.0 90 < th dose independent sin 23 NA
426 303.58 temperature 10.0 1440 > th dose independent rect. 24 5
429 303.58 temperature 30.0 1440 < th dose independent rect. 24 5
433 303.58 humidity 50.0 1440 > th dose independent rect. 24 5
442 303.58 atmosphere 995.0 1440 > th dose independent rect. 24 5
455 303.58 temperature 10.0 1440 > th dose independent rect. 5 19
482 304.13 radiation 10.0 90 < th dose dependent sin 23 NA
487 304.22 temperature 30.0 270 < th dose independent rect. 1 19
521 304.89 temperature 30.0 270 < th dose independent rect. 15 4
533 304.98 wind 5.0 10 < th dose independent rect. 21 8
534 305.00 radiation 10.0 90 < th dose independent rect. 4 19
540 305.02 temperature 30.0 90 < th dose dependent rect. 15 6
549 305.23 precipitation 0.1 90 < th dose independent rect. 21 7
550 305.23 precipitation 0.1 90 < th dose dependent rect. 21 7
557 305.36 wind 9.0 90 < th dose dependent rect. 21 7
566 305.52 wind 5.0 270 < th dose independent rect. 21 4
572 305.62 temperature 15.0 270 > th dose independent rect. 6 10
583 305.74 radiation 10.0 270 < th dose dependent rect. 11 8
589 305.83 temperature 30.0 90 < th dose dependent rect. 13 8
601 305.94 humidity 70.0 90 > th dose independent rect. 13 8
615 306.11 precipitation 0.1 270 < th dose independent rect. 6 10
617 306.11 precipitation 0.1 270 < th dose dependent rect. 6 10
626 306.25 temperature 10.0 90 > th dose independent rect. 21 7
627 306.25 temperature 30.0 90 < th dose independent rect. 21 7
628 306.25 humidity 50.0 90 > th dose independent rect. 21 7
631 306.25 atmosphere 995.0 90 > th dose independent rect. 21 7
632 306.25 radiation 1.0 90 < th dose independent rect. 21 7
637 306.25 temperature 10.0 90 > th dose independent rect. 4 17
638 306.25 atmosphere 1015.0 90 < th dose independent rect. 4 17
639 306.25 radiation 1.0 90 < th dose dependent rect. 21 7
723 307.26 wind 7.0 270 < th dose independent rect. 6 21
772 307.72 atmosphere 1015.0 270 < th dose independent rect. 6 10
773 307.72 temperature 10.0 270 > th dose independent rect. 16 14
782 307.78 wind 9.0 270 < th dose independent rect. 6 10
791 307.87 wind 9.0 90 < th dose independent rect. 4 17
797 307.93 radiation 40.0 270 < th dose dependent rect. 13 7
800 307.97 humidity 60.0 10 > th dose dependent rect. 15 6
849 308.40 temperature 10.0 90 > th dose dependent rect. 8 9
863 308.54 humidity 70.0 90 > th dose independent rect. 1 22
866 308.58 atmosphere 995.0 270 > th dose independent rect. 6 10
898 308.90 temperature 30.0 10 < th dose dependent rect. 12 9
901 308.92 humidity 70.0 10 > th dose independent rect. 17 15
908 309.00 temperature 10.0 10 > th dose dependent rect. 6 23
916 309.09 humidity 60.0 10 > th dose dependent rect. 12 9
934 309.33 humidity 90.0 90 < th dose independent rect. 23 18
951 309.47 humidity 60.0 90 > th dose dependent rect. 15 20
952 309.49 wind 9.0 270 < th dose dependent rect. 20 5
956 309.52 radiation 1.0 10 > th dose independent rect. 8 10