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Os02g0668400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : tRNA pseudouridine synthase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.39 (0.0205) R2 : 0.743
β1 : 1.65 (0.0752) R2dD : 0.282 R2D : 0.245
β2 : 1.56 (0.0529) R2dC : 0.492 R2C : 0.468
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.18 (0.0439) R2dN8 : 0.0127 R2N8 : -0.0148
σ : 0.386
deviance : 68.02
__
_____
C
peak time of C : 16.6
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
58.53 0.359 9.34 2.08 1.61 0.668 0.088 -1.2 0.393 16.9 27.24 710 -- --
60.64 0.363 9.37 1.88 1.51 0.654 0.0198 -- 0.303 16.7 35.88 1164 -- --
58.55 0.356 9.33 2.09 1.61 0.665 -- -1.22 0.394 16.9 27.3 712 -- --
60.58 0.363 9.37 1.85 1.51 0.688 -- -- 0.299 16.8 65.83 1142 -- --
178.36 0.622 9.31 2.1 -- 1.06 -- -0.927 0.379 -- 35.2 1194 -- --
68.02 0.387 9.39 1.65 1.56 -- 0.0287 -- 0.18 16.6 -- -- -- --
68.02 0.386 9.39 1.65 1.56 -- -- -- 0.18 16.6 -- -- -- --
179.05 0.623 9.34 1.91 -- 1.05 -- -- 0.326 -- 47.75 1211 -- --
99.28 0.464 9.5 -- 1.57 -1 -- -- -0.293 16.5 132.9 47520 -- --
197.63 0.657 9.38 1.59 -- -- -- -- 0.139 -- -- -- -- --
139.72 0.553 9.44 -- 1.53 -- -- -- -0.00377 16.6 -- -- -- --
229.04 0.705 9.49 -- -- -0.958 -- -- -0.327 -- 55.18 46565 -- --
264.26 0.759 9.42 -- -- -- -- -- -0.0374 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 53.71 radiation 20.0 270 < th dose independent rect. 1 8
2 54.14 radiation 40.0 270 < th dose dependent rect. 1 8
3 54.20 atmosphere 1015.0 270 < th dose dependent rect. 11 10
5 54.27 atmosphere 1010.0 270 < th dose independent rect. 11 10
7 54.31 radiation 40.0 270 < th dose dependent rect. 15 15
8 54.34 wind 9.0 270 < th dose independent rect. 6 9
10 54.39 temperature 10.0 270 > th dose dependent rect. 1 7
11 54.40 temperature 15.0 270 > th dose independent rect. 15 15
12 54.42 atmosphere 995.0 270 > th dose independent rect. 6 9
13 54.45 radiation 40.0 270 < th dose independent rect. 11 20
16 54.47 precipitation 0.1 270 < th dose independent rect. 15 15
17 54.47 precipitation 0.1 270 < th dose dependent rect. 15 15
19 54.53 temperature 10.0 270 > th dose independent rect. 6 9
20 54.53 atmosphere 1015.0 270 < th dose independent rect. 6 9
23 54.53 temperature 10.0 720 > th dose dependent rect. 19 10
24 54.54 precipitation 0.1 270 < th dose independent rect. 6 9
25 54.54 precipitation 0.1 270 < th dose dependent rect. 6 9
26 54.56 radiation 30.0 270 < th dose independent rect. 14 16
27 54.57 atmosphere 1015.0 270 < th dose independent rect. 15 15
32 54.64 radiation 40.0 270 < th dose independent rect. 12 18
33 54.65 temperature 10.0 270 > th dose dependent rect. 15 16
40 54.77 atmosphere 1000.0 270 > th dose independent rect. 19 7
41 54.77 temperature 15.0 90 > th dose independent rect. 17 15
49 54.85 wind 5.0 270 < th dose independent rect. 1 6
60 54.97 temperature 10.0 720 > th dose dependent rect. 18 13
62 55.00 atmosphere 1015.0 90 < th dose independent rect. 17 15
69 55.01 temperature 10.0 720 > th dose dependent rect. 12 18
73 55.04 humidity 50.0 90 > th dose independent rect. 8 9
82 55.06 radiation 30.0 90 < th dose independent rect. 3 8
88 55.07 wind 9.0 270 < th dose independent rect. 15 15
93 55.09 radiation 40.0 270 < th dose dependent rect. 1 12
94 55.10 humidity 50.0 270 > th dose independent rect. 6 9
100 55.15 atmosphere 995.0 270 > th dose dependent rect. 19 7
104 55.18 temperature 15.0 270 > th dose independent rect. 12 9
126 55.33 atmosphere 995.0 90 > th dose independent rect. 8 9
138 55.36 temperature 10.0 720 > th dose dependent rect. 18 6
139 55.38 temperature 15.0 10 > th dose independent rect. 17 15
140 55.38 radiation 40.0 90 < th dose independent rect. 17 15
145 55.40 temperature 10.0 90 > th dose independent rect. 8 9
146 55.40 atmosphere 1015.0 90 < th dose independent rect. 8 9
150 55.41 precipitation 0.1 90 < th dose independent rect. 8 9
152 55.41 precipitation 0.1 90 < th dose dependent rect. 8 9
167 55.45 humidity 50.0 270 > th dose independent rect. 21 14
175 55.48 temperature 10.0 720 > th dose dependent sin 14 NA
179 55.50 wind 9.0 270 < th dose dependent rect. 1 6
180 55.51 wind 1.0 90 > th dose independent rect. 8 9
183 55.51 temperature 10.0 270 > th dose independent rect. 21 14
184 55.51 atmosphere 995.0 270 > th dose independent rect. 21 14
190 55.53 temperature 30.0 720 < th dose dependent rect. 18 15
200 55.56 wind 9.0 270 < th dose independent rect. 8 17
202 55.56 temperature 30.0 720 < th dose dependent sin 11 NA
208 55.59 atmosphere 1015.0 10 < th dose independent rect. 17 15
214 55.61 precipitation 0.1 270 < th dose independent rect. 1 7
215 55.61 wind 9.0 270 < th dose independent rect. 21 14
219 55.61 precipitation 0.1 270 < th dose dependent rect. 1 7
226 55.64 radiation 30.0 90 < th dose independent rect. 3 6
231 55.65 wind 9.0 90 < th dose independent rect. 17 15
255 55.69 temperature 30.0 270 < th dose dependent rect. 21 4
259 55.70 temperature 30.0 270 < th dose dependent rect. 20 6
263 55.71 precipitation 0.1 270 < th dose independent rect. 11 10
268 55.71 precipitation 0.1 270 < th dose dependent rect. 11 10
288 55.76 atmosphere 1015.0 270 < th dose dependent rect. 14 16
292 55.78 precipitation 0.1 10 < th dose independent rect. 17 15
296 55.78 precipitation 0.1 10 < th dose dependent rect. 17 15
297 55.79 atmosphere 995.0 90 > th dose independent rect. 17 15
298 55.79 atmosphere 995.0 90 > th dose dependent rect. 8 9
304 55.81 humidity 50.0 90 > th dose independent rect. 17 15
316 55.84 humidity 50.0 270 > th dose independent rect. 14 16
328 55.87 temperature 30.0 720 < th dose dependent rect. 21 10
340 55.89 radiation 40.0 270 < th dose dependent sin 8 NA
353 55.92 humidity 70.0 270 > th dose independent rect. 1 7
358 55.93 wind 5.0 270 < th dose independent rect. 3 2
369 55.98 atmosphere 995.0 10 > th dose independent rect. 8 9
370 55.98 radiation 1.0 270 > th dose independent rect. 6 9
382 56.01 atmosphere 995.0 10 > th dose dependent rect. 9 8
387 56.02 temperature 10.0 270 > th dose independent rect. 1 7
389 56.02 temperature 30.0 270 < th dose independent rect. 1 7
390 56.02 humidity 50.0 270 > th dose independent rect. 1 7
392 56.02 atmosphere 995.0 270 > th dose independent rect. 1 7
393 56.02 atmosphere 1015.0 270 < th dose independent rect. 1 7
395 56.02 temperature 10.0 10 > th dose independent rect. 8 9
397 56.02 atmosphere 1015.0 10 < th dose independent rect. 8 9
398 56.02 precipitation 0.1 10 < th dose independent rect. 8 9
400 56.02 temperature 10.0 270 > th dose independent rect. 8 17
401 56.02 precipitation 0.1 10 < th dose dependent rect. 8 9
420 56.05 precipitation 0.1 270 < th dose independent rect. 21 14
423 56.05 atmosphere 995.0 270 > th dose dependent rect. 21 4
426 56.05 precipitation 0.1 270 < th dose dependent rect. 21 14
448 56.09 wind 9.0 270 < th dose independent rect. 5 22
454 56.10 humidity 70.0 90 > th dose independent rect. 3 6
459 56.11 atmosphere 995.0 270 > th dose independent rect. 15 15
490 56.15 wind 1.0 270 > th dose independent rect. 11 10
534 56.21 humidity 50.0 10 > th dose independent rect. 17 15
536 56.22 precipitation 0.1 270 < th dose independent rect. 3 2
538 56.22 precipitation 0.1 270 < th dose dependent rect. 3 2
547 56.24 precipitation 0.1 90 < th dose independent rect. 3 5
550 56.24 precipitation 0.1 90 < th dose dependent rect. 3 5
584 56.28 humidity 70.0 90 > th dose independent rect. 3 8
591 56.29 radiation 40.0 270 < th dose independent rect. 1 15
593 56.29 precipitation 0.1 270 < th dose independent rect. 2 17
595 56.29 precipitation 0.1 270 < th dose dependent rect. 2 17
648 56.35 wind 9.0 270 < th dose dependent rect. 3 2
688 56.43 radiation 40.0 90 < th dose independent rect. 3 19
691 56.44 radiation 40.0 90 < th dose independent rect. 3 12
698 56.45 atmosphere 995.0 10 > th dose independent rect. 17 15
722 56.47 radiation 40.0 270 < th dose independent rect. 11 10
733 56.49 temperature 30.0 90 < th dose independent rect. 3 6
737 56.49 precipitation 0.1 270 < th dose independent rect. 8 17
739 56.49 precipitation 0.1 270 < th dose dependent rect. 8 17
749 56.51 atmosphere 995.0 270 > th dose independent rect. 8 17
753 56.51 radiation 40.0 90 < th dose dependent rect. 12 23
764 56.52 humidity 50.0 270 > th dose dependent rect. 1 7
778 56.55 temperature 10.0 90 > th dose independent rect. 3 5
781 56.55 humidity 50.0 90 > th dose independent rect. 3 5
783 56.55 atmosphere 995.0 90 > th dose independent rect. 3 5
784 56.55 atmosphere 1015.0 90 < th dose independent rect. 3 5
793 56.55 atmosphere 1015.0 90 < th dose dependent rect. 17 15
802 56.56 humidity 50.0 90 > th dose dependent rect. 3 8
812 56.58 radiation 1.0 270 > th dose independent sin 2 NA
852 56.63 wind 1.0 270 > th dose independent rect. 8 17
853 56.63 temperature 15.0 270 > th dose independent rect. 2 17
858 56.64 temperature 15.0 10 > th dose dependent rect. 3 5
870 56.65 atmosphere 995.0 90 > th dose dependent rect. 8 19
896 56.67 wind 9.0 270 < th dose independent rect. 12 9
937 56.71 temperature 30.0 10 < th dose dependent rect. 22 6
976 56.75 temperature 10.0 270 > th dose independent rect. 19 7
977 56.75 temperature 30.0 270 < th dose independent rect. 19 7
978 56.75 humidity 50.0 270 > th dose independent rect. 19 7
980 56.75 radiation 1.0 270 < th dose independent rect. 19 7
989 56.75 atmosphere 1015.0 270 < th dose independent rect. 2 17
992 56.75 radiation 1.0 270 < th dose dependent rect. 19 7