Os02g0667300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Alcohol dehydrogenase superfamily, zinc-containing protein.
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Os02g0667300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Alcohol dehydrogenase superfamily, zinc-containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 292.56 | 0.804 | 5.35 | -3.15 | 0.526 | -4.53 | -1.56 | -3.33 | 0.302 | 15.2 | 18.8 | 5885 | -- | -- |
| 302.57 | 0.81 | 5.45 | -3.26 | 0.505 | -3.62 | -2.02 | -- | 0.297 | 15.6 | 18.6 | 5892 | -- | -- |
| 298.43 | 0.805 | 5.36 | -3.22 | 0.505 | -4.8 | -- | -3.61 | 0.284 | 14.7 | 18.6 | 6052 | -- | -- |
| 308.73 | 0.818 | 5.46 | -3.32 | 0.495 | -3.56 | -- | -- | 0.301 | 14.6 | 18.7 | 6079 | -- | -- |
| 312.97 | 0.824 | 5.34 | -3.26 | -- | -4.88 | -- | -3.8 | 0.29 | -- | 18.57 | 6052 | -- | -- |
| 470.19 | 1.02 | 5.28 | -1.1 | 0.487 | -- | -1.62 | -- | 1.09 | 14.9 | -- | -- | -- | -- |
| 479.14 | 1.03 | 5.28 | -1.14 | 0.48 | -- | -- | -- | 1.08 | 14.7 | -- | -- | -- | -- |
| 322.74 | 0.837 | 5.47 | -3.33 | -- | -3.5 | -- | -- | 0.267 | -- | 18.71 | 6103 | -- | -- |
| 474.56 | 1.01 | 5.31 | -- | 0.54 | -2.86 | -- | -- | 0.991 | 15.1 | 17.2 | 3074 | -- | -- |
| 492.56 | 1.04 | 5.28 | -1.16 | -- | -- | -- | -- | 1.06 | -- | -- | -- | -- | -- |
| 513.23 | 1.06 | 5.25 | -- | 0.503 | -- | -- | -- | 1.2 | 14.8 | -- | -- | -- | -- |
| 484.63 | 1.03 | 5.29 | -- | -- | -1.98 | -- | -- | 1.04 | -- | 17.25 | 3163 | -- | -- |
| 527.91 | 1.07 | 5.26 | -- | -- | -- | -- | -- | 1.19 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 267.36 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 12 |
| 2 | 269.01 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 18 | 12 |
| 3 | 269.64 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 4 | 269.64 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 5 | 270.17 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 6 | 270.17 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 8 | 271.25 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 18 | 10 |
| 11 | 271.41 | temperature | 20.0 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 25 | 271.97 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 26 | 272.02 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 18 | 3 |
| 28 | 272.04 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 45 | 272.89 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 46 | 272.90 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 62 | 273.59 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 18 | 5 |
| 82 | 274.08 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 2 | 6 |
| 83 | 274.08 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 2 | 6 |
| 84 | 274.09 | atmosphere | 1010.0 | 43200 | > th | dose dependent | rect. | 16 | 1 |
| 88 | 274.16 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 2 | 6 |
| 97 | 274.30 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 19 | 14 |
| 124 | 274.64 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 12 | 21 |
| 131 | 274.75 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 5 | 19 |
| 132 | 274.76 | atmosphere | 1015.0 | 43200 | < th | dose independent | sin | 14 | NA |
| 139 | 274.80 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 5 | 6 |
| 143 | 274.82 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 20 | 15 |
| 147 | 274.83 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 23 | 12 |
| 159 | 274.88 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 3 | 8 |
| 184 | 274.97 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 5 | 6 |
| 190 | 274.99 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 12 | 13 |
| 198 | 275.03 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 19 | 20 |
| 234 | 275.15 | radiation | 20.0 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 250 | 275.16 | humidity | 70.0 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 279 | 275.25 | atmosphere | 1010.0 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 292 | 275.32 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 324 | 275.41 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 19 | 14 |
| 353 | 275.50 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 5 | 3 |
| 362 | 275.53 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 374 | 275.56 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 402 | 275.63 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 410 | 275.65 | radiation | 1.0 | 14400 | < th | dose independent | sin | 7 | NA |
| 417 | 275.65 | atmosphere | 1010.0 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 422 | 275.68 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 5 | 3 |
| 445 | 275.74 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 456 | 275.76 | atmosphere | 1015.0 | 43200 | < th | dose independent | no | NA | NA |
| 458 | 275.76 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 2 | 6 |
| 500 | 275.89 | radiation | 1.0 | 14400 | > th | dose independent | sin | 7 | NA |
| 511 | 275.92 | temperature | 20.0 | 43200 | < th | dose dependent | sin | 4 | NA |
| 515 | 275.93 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 12 | 21 |
| 550 | 276.06 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 5 | 20 |
| 564 | 276.11 | atmosphere | 1015.0 | 43200 | > th | dose independent | sin | 13 | NA |
| 567 | 276.11 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 19 | 19 |
| 580 | 276.16 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 23 | 13 |
| 633 | 276.31 | atmosphere | 1010.0 | 43200 | > th | dose dependent | rect. | 6 | 12 |
| 741 | 276.58 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 773 | 276.65 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 17 | 8 |
| 791 | 276.69 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 792 | 276.69 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 17 | 4 |
| 859 | 276.87 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 12 | 13 |
| 924 | 277.02 | atmosphere | 1015.0 | 43200 | > th | dose independent | no | NA | NA |
| 929 | 277.02 | atmosphere | 1010.0 | 43200 | > th | dose dependent | sin | 0 | NA |