FiT-DB / Search/ Help/ Sample detail

Os02g0666800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF788 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.5 (0.0147) R2 : 0.529
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.837 (0.0371) R2dC : 0.526 R2C : 0.522
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0732 (0.031) R2dN8 : 0.00745 R2N8 : 0.00275
σ : 0.278
deviance : 35.2
__
_____
C
peak time of C : 15.4
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
23.87 0.23 12.5 0.597 0.628 -0.356 0.216 0.118 0.114 17.3 7.489 79 -- --
23.95 0.228 12.5 0.596 0.624 -0.363 0.177 -- 0.114 17.3 7.48 79 -- --
23.98 0.228 12.5 0.602 0.629 -0.354 -- 0.0935 0.117 17.2 7.457 79 -- --
24.02 0.228 12.5 0.595 0.629 -0.352 -- -- 0.115 17.2 7.429 79 -- --
25.99 0.237 12.4 0.503 -- -0.799 -- 0.0622 0.0934 -- 0.2761 484 -- --
25.86 0.238 12.4 0.594 0.848 -- 0.0575 -- 0.139 15.4 -- -- -- --
25.87 0.238 12.4 0.595 0.849 -- -- -- 0.139 15.4 -- -- -- --
25.87 0.237 12.4 0.512 -- -0.817 -- -- 0.103 -- 0.2269 481 -- --
33.23 0.268 12.5 -- 0.576 -0.372 -- -- 0.0529 17.3 6 102 -- --
66.28 0.38 12.4 0.559 -- -- -- -- 0.117 -- -- -- -- --
35.2 0.278 12.5 -- 0.837 -- -- -- 0.0732 15.4 -- -- -- --
32.79 0.267 12.4 -- -- -0.839 -- -- 0.0599 -- 0.001328 484 -- --
74.53 0.403 12.5 -- -- -- -- -- 0.055 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 21.29 radiation 1.0 90 < th dose dependent rect. 3 16
2 21.34 wind 5.0 90 < th dose dependent rect. 3 3
5 21.39 radiation 1.0 90 < th dose independent rect. 3 16
6 21.42 wind 5.0 90 < th dose independent rect. 3 3
8 21.45 atmosphere 1005.0 90 > th dose independent rect. 3 3
9 21.51 atmosphere 995.0 90 > th dose dependent rect. 3 3
10 21.54 humidity 50.0 270 > th dose independent rect. 15 14
12 21.57 temperature 15.0 90 > th dose independent rect. 6 21
13 21.58 humidity 50.0 90 > th dose dependent rect. 3 3
15 21.59 humidity 80.0 90 > th dose independent rect. 3 3
16 21.60 temperature 15.0 10 > th dose independent rect. 6 22
17 21.61 precipitation 0.1 90 < th dose independent rect. 6 21
19 21.61 precipitation 0.1 90 < th dose dependent rect. 6 21
23 21.65 precipitation 0.1 90 < th dose independent rect. 3 3
24 21.65 atmosphere 1000.0 10 > th dose dependent rect. 3 3
25 21.65 precipitation 0.1 90 < th dose dependent rect. 3 3
27 21.66 temperature 10.0 90 > th dose independent rect. 3 3
29 21.66 temperature 30.0 90 < th dose independent rect. 3 3
30 21.66 humidity 50.0 90 > th dose independent rect. 3 3
33 21.66 atmosphere 995.0 90 > th dose independent rect. 3 3
34 21.66 atmosphere 1010.0 90 < th dose independent rect. 3 3
36 21.66 radiation 20.0 90 < th dose independent rect. 3 3
39 21.66 wind 9.0 270 < th dose independent rect. 15 14
41 21.66 radiation 40.0 90 < th dose dependent rect. 3 3
45 21.68 wind 9.0 90 < th dose independent rect. 6 21
49 21.70 radiation 30.0 270 < th dose independent rect. 15 14
51 21.71 atmosphere 1005.0 10 > th dose independent rect. 3 3
56 21.72 precipitation 0.1 270 < th dose independent rect. 5 10
58 21.72 precipitation 0.1 270 < th dose dependent rect. 5 10
59 21.73 temperature 10.0 270 > th dose independent rect. 5 10
60 21.73 atmosphere 1015.0 270 < th dose independent rect. 5 10
61 21.73 temperature 10.0 270 > th dose independent rect. 15 14
64 21.75 wind 3.0 10 < th dose independent rect. 3 3
65 21.75 wind 9.0 270 < th dose independent rect. 5 10
77 21.79 temperature 10.0 90 > th dose dependent rect. 3 3
82 21.81 temperature 10.0 90 > th dose dependent rect. 6 21
84 21.82 radiation 40.0 270 < th dose dependent rect. 15 14
95 21.87 temperature 10.0 10 > th dose dependent rect. 6 21
96 21.88 atmosphere 995.0 270 > th dose independent rect. 5 10
97 21.88 precipitation 0.1 10 < th dose independent rect. 6 22
99 21.88 precipitation 0.1 10 < th dose dependent rect. 6 22
102 21.90 humidity 70.0 90 > th dose dependent rect. 4 1
110 21.91 humidity 50.0 90 > th dose dependent rect. 17 13
119 21.94 temperature 10.0 10 > th dose independent rect. 4 2
121 21.94 temperature 30.0 10 < th dose independent rect. 4 2
122 21.94 humidity 50.0 10 > th dose independent rect. 4 2
125 21.94 atmosphere 995.0 10 > th dose independent rect. 4 2
126 21.94 atmosphere 1010.0 10 < th dose independent rect. 4 2
128 21.94 radiation 20.0 10 < th dose independent rect. 4 2
131 21.94 precipitation 0.1 10 < th dose independent rect. 4 2
136 21.94 humidity 50.0 10 > th dose dependent rect. 4 2
137 21.94 precipitation 0.1 10 < th dose dependent rect. 4 2
140 21.96 temperature 25.0 90 < th dose independent rect. 4 1
141 21.96 wind 1.0 270 > th dose independent rect. 2 2
142 21.96 wind 9.0 10 < th dose independent rect. 6 22
145 21.97 radiation 40.0 10 < th dose dependent rect. 4 2
147 21.98 humidity 80.0 90 > th dose independent rect. 4 1
151 21.98 precipitation 0.1 270 < th dose independent rect. 15 14
154 21.98 precipitation 0.1 270 < th dose dependent rect. 15 14
156 21.99 temperature 10.0 90 > th dose independent rect. 4 1
159 21.99 humidity 50.0 90 > th dose independent rect. 4 1
162 21.99 atmosphere 995.0 90 > th dose independent rect. 4 1
163 21.99 atmosphere 1010.0 90 < th dose independent rect. 4 1
165 21.99 radiation 20.0 90 < th dose independent rect. 4 1
168 21.99 precipitation 0.1 90 < th dose independent rect. 4 1
173 21.99 precipitation 0.1 90 < th dose dependent rect. 4 1
175 21.99 temperature 10.0 10 > th dose dependent rect. 4 2
184 22.00 radiation 20.0 90 < th dose dependent rect. 4 1
192 22.01 radiation 1.0 90 < th dose dependent rect. 4 1
196 22.02 radiation 1.0 90 < th dose independent rect. 4 1
214 22.05 atmosphere 995.0 90 > th dose independent rect. 17 13
215 22.05 wind 9.0 90 < th dose independent rect. 5 23
289 22.10 temperature 30.0 90 < th dose dependent rect. 4 1
294 22.10 humidity 50.0 10 > th dose dependent rect. 16 14
296 22.11 temperature 10.0 90 > th dose dependent rect. 4 1
302 22.12 atmosphere 995.0 270 > th dose independent rect. 15 14
321 22.14 humidity 50.0 270 > th dose independent rect. 5 10
334 22.16 temperature 30.0 90 < th dose independent rect. 16 14
371 22.23 atmosphere 995.0 90 > th dose independent rect. 6 21
395 22.24 atmosphere 1015.0 90 < th dose dependent rect. 4 1
433 22.31 atmosphere 1015.0 90 < th dose independent rect. 6 21
485 22.38 atmosphere 995.0 10 > th dose independent rect. 16 14
512 22.42 temperature 15.0 90 > th dose independent rect. 19 8
566 22.48 atmosphere 995.0 10 > th dose independent rect. 6 22
571 22.48 wind 9.0 90 < th dose dependent rect. 17 13
573 22.49 temperature 10.0 10 > th dose independent rect. 6 10
575 22.49 atmosphere 1015.0 10 < th dose independent rect. 6 10
576 22.49 precipitation 0.1 10 < th dose independent rect. 6 10
577 22.49 radiation 1.0 90 > th dose independent rect. 6 11
578 22.49 wind 9.0 10 < th dose independent rect. 16 14
579 22.49 temperature 10.0 10 > th dose independent rect. 16 14
581 22.49 radiation 20.0 10 < th dose independent rect. 16 14
582 22.49 radiation 40.0 10 < th dose independent rect. 16 14
585 22.49 precipitation 0.1 10 < th dose dependent rect. 6 10
604 22.52 wind 9.0 1440 < th dose independent rect. 4 3
605 22.52 temperature 10.0 1440 > th dose independent rect. 4 3
608 22.52 temperature 30.0 1440 < th dose independent rect. 4 3
612 22.52 humidity 50.0 1440 > th dose independent rect. 4 3
617 22.52 atmosphere 995.0 1440 > th dose independent rect. 4 3
618 22.52 atmosphere 1015.0 1440 < th dose independent rect. 4 3
619 22.52 radiation 40.0 1440 < th dose independent rect. 4 3
624 22.52 temperature 10.0 1440 > th dose independent rect. 7 21
634 22.53 wind 9.0 10 < th dose independent rect. 6 10
643 22.54 temperature 30.0 720 > th dose dependent rect. 18 1
645 22.54 temperature 30.0 10 < th dose dependent rect. 4 2
669 22.55 atmosphere 1015.0 10 < th dose independent rect. 6 22
683 22.56 humidity 50.0 30 > th dose dependent rect. 3 9
698 22.58 atmosphere 995.0 10 > th dose independent rect. 6 10
716 22.59 radiation 1.0 270 < th dose dependent rect. 1 4
746 22.61 atmosphere 1015.0 90 < th dose independent rect. 17 13
747 22.61 temperature 30.0 10 < th dose independent rect. 16 14
764 22.62 radiation 1.0 90 < th dose independent rect. 3 20
767 22.63 humidity 50.0 1440 < th dose independent rect. 16 1
779 22.64 temperature 20.0 720 > th dose independent rect. 12 5
780 22.64 radiation 1.0 10 > th dose independent rect. 6 10
784 22.64 radiation 40.0 10 < th dose independent rect. 6 22
785 22.64 humidity 50.0 1440 < th dose dependent rect. 16 1
788 22.64 atmosphere 1015.0 10 < th dose dependent rect. 4 2
805 22.65 atmosphere 995.0 90 > th dose independent rect. 3 16
857 22.67 temperature 10.0 1440 > th dose independent rect. 7 10
863 22.67 temperature 10.0 1440 > th dose independent rect. 17 14
866 22.67 radiation 40.0 1440 < th dose independent rect. 17 14
897 22.68 precipitation 0.1 90 < th dose independent rect. 19 8
908 22.68 precipitation 0.1 90 < th dose dependent rect. 19 8
955 22.71 precipitation 0.1 10 < th dose independent rect. 16 14
957 22.71 precipitation 0.1 10 < th dose dependent rect. 16 14
958 22.72 radiation 1.0 90 > th dose independent sin 1 NA
985 22.73 wind 9.0 10 < th dose dependent rect. 6 21