Os02g0666300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to MAP3Ka.
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Os02g0666300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to MAP3Ka.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.75 | 0.247 | 10.4 | 0.865 | 0.412 | 0.422 | -0.145 | 2.68 | 0.305 | 22.5 | 21.4 | 1636 | -- | -- |
| 42.25 | 0.305 | 10.5 | 0.222 | 0.467 | 0.228 | -0.127 | -- | 0.162 | 22.8 | 21.4 | 1636 | -- | -- |
| 27.73 | 0.245 | 10.4 | 0.922 | 0.416 | 0.373 | -- | 2.62 | 0.316 | 22.4 | 21.65 | 1618 | -- | -- |
| 40.33 | 0.296 | 10.5 | 0.153 | 0.324 | 0.385 | -- | -- | 0.087 | 21.5 | 24.7 | 1057 | -- | -- |
| 38 | 0.287 | 10.4 | 0.919 | -- | 0.382 | -- | 2.47 | 0.303 | -- | 21.7 | 1958 | -- | -- |
| 44.76 | 0.314 | 10.4 | 0.282 | 0.408 | -- | -0.149 | -- | 0.216 | 22.4 | -- | -- | -- | -- |
| 44.85 | 0.314 | 10.4 | 0.288 | 0.409 | -- | -- | -- | 0.216 | 22.4 | -- | -- | -- | -- |
| 44.08 | 0.309 | 10.5 | 0.109 | -- | 0.493 | -- | -- | 0.0286 | -- | 24.79 | 801 | -- | -- |
| 40.96 | 0.298 | 10.5 | -- | 0.317 | 0.418 | -- | -- | 0.046 | 21.6 | 24.77 | 1056 | -- | -- |
| 55.08 | 0.347 | 10.4 | 0.295 | -- | -- | -- | -- | 0.217 | -- | -- | -- | -- | -- |
| 47.04 | 0.321 | 10.5 | -- | 0.411 | -- | -- | -- | 0.184 | 22.4 | -- | -- | -- | -- |
| 44.46 | 0.311 | 10.5 | -- | -- | 0.523 | -- | -- | 0.00565 | -- | 24.74 | 803 | -- | -- |
| 57.37 | 0.354 | 10.4 | -- | -- | -- | -- | -- | 0.185 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.20 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 3 |
| 47 | 30.24 | temperature | 25 | 1440 | < th | dose dependent | sin | 15 | NA |
| 58 | 30.37 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 10 |
| 77 | 30.54 | temperature | 25 | 1440 | < th | dose dependent | rect. | 16 | 19 |
| 82 | 30.57 | temperature | 20 | 1440 | > th | dose independent | rect. | 14 | 16 |
| 114 | 30.63 | temperature | 25 | 1440 | < th | dose dependent | rect. | 9 | 18 |
| 117 | 30.64 | temperature | 15 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 152 | 30.69 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 12 |
| 215 | 30.78 | temperature | 20 | 1440 | > th | dose dependent | sin | 12 | NA |
| 284 | 30.87 | temperature | 20 | 1440 | < th | dose independent | rect. | 14 | 16 |
| 372 | 30.98 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 12 |
| 394 | 31.00 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 399 | 31.01 | temperature | 20 | 1440 | > th | dose independent | sin | 13 | NA |
| 428 | 31.04 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 23 |
| 460 | 31.08 | temperature | 25 | 1440 | < th | dose dependent | rect. | 23 | 23 |
| 643 | 31.31 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 644 | 31.31 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 23 |
| 705 | 31.38 | temperature | 20 | 1440 | < th | dose independent | sin | 13 | NA |
| 738 | 31.42 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 802 | 31.49 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 3 |
| 922 | 31.61 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 3 |
| 985 | 31.68 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 23 |
| 988 | 31.69 | temperature | 20 | 1440 | < th | dose independent | rect. | 2 | 22 |