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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0665700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.24 (0.0263) R2 : 0.00573
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0899 (0.0555) R2dN8 : 0.0074 R2N8 : 0.00573
σ : 0.496
deviance : 112.95
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
110.3 0.493 3.22 0.204 0.283 0.262 -0.95 -1.01 0.119 11.2 0.03861 30 -- --
110.9 0.494 3.23 0.128 0.261 0.239 0.184 -- 0.12 10.9 0.03861 30 -- --
110.5 0.493 3.23 0.146 0.27 0.246 -- -0.288 0.125 10.8 0.03861 30 -- --
110.91 0.49 3.23 0.142 0.274 0.239 -- -- 0.124 10.9 0.02068 6 -- --
111.61 0.495 3.24 0.131 -- 0.0708 -- -0.261 0.111 -- 1.623e-06 18 -- --
112.36 0.497 3.24 0.11 0.0379 -- -0.195 -- 0.101 2.14 -- -- -- --
112.49 0.497 3.24 0.116 0.0412 -- -- -- 0.102 3.47 -- -- -- --
112.02 0.493 3.24 0.126 -- 0.0713 -- -- 0.112 -- 0.0001217 6 -- --
111.44 0.492 3.23 -- 0.26 0.228 -- -- 0.12 10.9 0.02358 6 -- --
112.59 0.496 3.24 0.118 -- -- -- -- 0.103 -- -- -- -- --
112.84 0.497 3.24 -- 0.0435 -- -- -- 0.089 3.46 -- -- -- --
112.43 0.494 3.24 -- -- 0.0757 -- -- 0.109 -- 1.476e-05 6 -- --
112.95 0.496 3.24 -- -- -- -- -- 0.0899 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 107.14 radiation 40.0 43200 < th dose dependent rect. 23 1
2 107.22 atmosphere 1005.0 10 > th dose dependent rect. 2 2
5 107.37 precipitation 0.1 720 < th dose independent rect. 15 8
6 107.37 radiation 20.0 4320 < th dose dependent rect. 23 1
7 107.37 precipitation 0.1 720 < th dose dependent rect. 15 8
11 107.45 atmosphere 995.0 720 > th dose independent rect. 23 16
14 107.52 wind 9.0 1440 < th dose independent rect. 23 1
15 107.52 temperature 10.0 1440 > th dose independent rect. 23 1
18 107.52 temperature 30.0 1440 < th dose independent rect. 23 1
22 107.52 humidity 50.0 1440 > th dose independent rect. 23 1
32 107.52 atmosphere 995.0 1440 > th dose independent rect. 23 1
33 107.52 radiation 1.0 1440 < th dose independent rect. 23 1
53 107.52 temperature 10.0 1440 > th dose independent rect. 24 23
61 107.53 wind 3.0 30 < th dose independent rect. 22 1
62 107.53 atmosphere 1000.0 90 > th dose independent rect. 3 23
63 107.54 temperature 25.0 30 > th dose independent rect. 22 1
65 107.56 atmosphere 1010.0 30 < th dose dependent rect. 2 1
67 107.57 humidity 80.0 30 > th dose independent rect. 22 1
68 107.57 atmosphere 1005.0 30 > th dose dependent rect. 18 5
69 107.60 atmosphere 1005.0 30 > th dose dependent rect. 22 1
71 107.63 temperature 20.0 30 > th dose dependent rect. 22 1
72 107.63 humidity 90.0 30 > th dose dependent rect. 2 1
73 107.64 atmosphere 1000.0 720 > th dose independent rect. 3 8
74 107.65 wind 3.0 10 < th dose independent rect. 2 1
75 107.65 wind 5.0 30 < th dose dependent rect. 22 1
78 107.66 temperature 15.0 10 > th dose independent rect. 3 23
82 107.69 atmosphere 1005.0 30 > th dose independent rect. 22 1
83 107.69 wind 5.0 10 < th dose dependent rect. 2 1
91 107.71 temperature 25.0 10 < th dose independent rect. 2 1
92 107.71 humidity 90.0 30 < th dose independent rect. 22 1
96 107.72 temperature 10.0 10 > th dose dependent rect. 2 1
98 107.72 humidity 50.0 10 > th dose dependent rect. 2 1
102 107.73 temperature 10.0 10 > th dose independent rect. 2 1
105 107.73 humidity 50.0 10 > th dose independent rect. 2 1
108 107.73 atmosphere 995.0 10 > th dose independent rect. 2 1
109 107.73 atmosphere 1010.0 10 < th dose independent rect. 2 1
111 107.73 radiation 1.0 10 < th dose independent rect. 2 1
116 107.73 precipitation 0.1 10 < th dose independent rect. 2 1
119 107.73 radiation 1.0 10 < th dose dependent rect. 2 1
124 107.73 precipitation 0.1 10 < th dose dependent rect. 2 1
129 107.75 humidity 60.0 30 > th dose dependent rect. 22 1
131 107.76 wind 1.0 30 > th dose independent rect. 22 1
132 107.76 humidity 90.0 10 > th dose independent rect. 2 1
133 107.76 precipitation 0.1 30 < th dose independent rect. 22 1
137 107.76 precipitation 0.1 30 < th dose dependent rect. 22 1
140 107.77 temperature 10.0 30 > th dose independent rect. 22 1
142 107.77 temperature 30.0 30 < th dose independent rect. 22 1
143 107.77 humidity 50.0 30 > th dose independent rect. 22 1
147 107.77 atmosphere 1010.0 30 < th dose independent rect. 22 1
149 107.77 radiation 1.0 30 < th dose independent rect. 22 1
155 107.77 temperature 10.0 30 > th dose independent rect. 23 23
157 107.77 radiation 1.0 30 < th dose dependent rect. 22 1
168 107.83 wind 1.0 30 > th dose independent rect. 2 1
177 107.85 temperature 30.0 30 < th dose dependent rect. 2 1
194 107.86 temperature 25.0 30 > th dose independent rect. 18 5
195 107.86 temperature 10.0 720 > th dose independent rect. 15 8
196 107.86 temperature 10.0 720 > th dose independent rect. 23 16
197 107.86 atmosphere 995.0 720 > th dose independent rect. 11 16
215 107.88 humidity 50.0 720 > th dose independent rect. 3 8
217 107.89 atmosphere 995.0 720 > th dose independent rect. 15 8
221 107.90 temperature 10.0 720 > th dose independent rect. 3 8
223 107.90 temperature 10.0 720 > th dose independent rect. 11 16
225 107.90 atmosphere 995.0 10 > th dose dependent rect. 2 1
234 107.95 wind 9.0 10 < th dose independent rect. 3 23
235 107.96 atmosphere 1005.0 30 > th dose independent rect. 2 1
241 108.00 atmosphere 1015.0 30 < th dose dependent rect. 22 1
242 108.02 wind 9.0 720 < th dose independent rect. 3 8
244 108.03 precipitation 0.1 720 < th dose independent rect. 11 16
245 108.03 precipitation 0.1 720 < th dose dependent rect. 11 16
249 108.07 humidity 90.0 30 < th dose dependent rect. 22 1
254 108.16 wind 1.0 30 > th dose dependent rect. 22 1
255 108.17 temperature 30.0 30 < th dose dependent rect. 22 1
266 108.34 precipitation 0.1 720 < th dose independent rect. 3 8
267 108.34 precipitation 0.1 720 < th dose independent rect. 23 16
268 108.34 radiation 1.0 43200 < th dose dependent rect. 3 1
269 108.34 precipitation 0.1 720 < th dose dependent rect. 3 8
270 108.34 precipitation 0.1 720 < th dose dependent rect. 23 16
280 108.49 wind 9.0 30 < th dose independent rect. 23 23
283 108.50 atmosphere 1015.0 720 < th dose independent rect. 3 8
287 108.54 temperature 25.0 30 > th dose independent rect. 20 3
288 108.54 atmosphere 1005.0 270 > th dose dependent rect. 18 1
289 108.55 precipitation 0.1 30 < th dose independent rect. 3 23
290 108.55 precipitation 0.1 30 < th dose dependent rect. 3 23
299 108.62 humidity 90.0 90 < th dose independent rect. 2 1
300 108.62 atmosphere 1000.0 30 > th dose independent rect. 23 23
330 108.65 wind 9.0 1440 < th dose independent rect. 3 1
331 108.65 temperature 10.0 1440 > th dose independent rect. 3 1
334 108.65 temperature 30.0 1440 < th dose independent rect. 3 1
338 108.65 humidity 50.0 1440 > th dose independent rect. 3 1
347 108.65 atmosphere 995.0 1440 > th dose independent rect. 3 1
348 108.65 radiation 1.0 1440 < th dose independent rect. 3 1
368 108.65 temperature 10.0 1440 > th dose independent rect. 4 23
371 108.65 radiation 1.0 1440 < th dose dependent rect. 3 1
393 108.70 temperature 25.0 10 > th dose independent rect. 24 11
422 108.76 wind 1.0 30 < th dose independent rect. 24 3
430 108.79 atmosphere 1000.0 720 > th dose independent rect. 23 8
436 108.82 temperature 25.0 90 > th dose dependent rect. 20 3
444 108.91 atmosphere 1000.0 10 > th dose independent rect. 4 14
447 108.93 precipitation 0.1 30 < th dose independent rect. 23 23
448 108.93 precipitation 0.1 30 < th dose dependent rect. 23 23
449 108.95 humidity 70.0 30 > th dose independent rect. 18 1
452 108.96 radiation 1.0 30 < th dose dependent rect. 5 23
456 108.99 temperature 25.0 30 > th dose dependent rect. 18 6
459 109.04 temperature 30.0 30 < th dose dependent rect. 18 1
460 109.04 temperature 10.0 30 > th dose dependent rect. 4 14
462 109.06 humidity 70.0 10 > th dose independent rect. 18 10
464 109.07 wind 9.0 720 < th dose independent rect. 15 8
465 109.07 atmosphere 1000.0 720 > th dose independent rect. 19 16
468 109.08 temperature 25.0 720 > th dose independent rect. 6 1
474 109.10 temperature 30.0 30 < th dose independent rect. 18 1
480 109.13 atmosphere 1005.0 30 > th dose dependent rect. 18 1
488 109.16 temperature 20.0 720 > th dose dependent rect. 3 3
489 109.17 radiation 40.0 720 < th dose independent rect. 15 8
491 109.20 humidity 70.0 30 > th dose dependent rect. 18 1
497 109.23 atmosphere 995.0 30 > th dose dependent rect. 4 14
504 109.26 radiation 10.0 10 < th dose independent rect. 4 22
507 109.27 temperature 25.0 720 > th dose independent rect. 4 3
510 109.28 atmosphere 995.0 720 > th dose independent rect. 7 16
515 109.30 atmosphere 995.0 720 > th dose independent rect. 11 8
519 109.30 radiation 1.0 30 < th dose dependent rect. 1 23
528 109.35 temperature 30.0 30 < th dose independent rect. 18 10
529 109.35 temperature 25.0 10 > th dose independent rect. 24 18
541 109.39 temperature 25.0 30 > th dose independent rect. 24 7
547 109.40 atmosphere 995.0 10 > th dose dependent rect. 18 10
559 109.44 radiation 20.0 720 > th dose independent rect. 15 1
562 109.44 humidity 50.0 30 > th dose independent rect. 3 23
567 109.46 wind 1.0 720 > th dose independent rect. 15 8
571 109.48 precipitation 0.1 720 < th dose independent rect. 23 8
574 109.48 precipitation 0.1 720 < th dose dependent rect. 23 8
575 109.48 radiation 1.0 10 < th dose dependent rect. 13 15
587 109.50 radiation 30.0 720 < th dose independent rect. 23 8
597 109.53 temperature 10.0 720 > th dose independent rect. 23 8
598 109.53 temperature 30.0 720 < th dose independent rect. 23 8
599 109.53 humidity 50.0 720 > th dose independent rect. 23 8
603 109.53 temperature 10.0 720 > th dose independent rect. 7 16
611 109.55 wind 9.0 720 < th dose independent rect. 23 8
612 109.55 temperature 10.0 720 > th dose independent rect. 11 8
613 109.55 atmosphere 1015.0 720 < th dose independent rect. 11 8
614 109.55 temperature 10.0 720 > th dose independent rect. 19 16
627 109.59 wind 9.0 10 < th dose independent rect. 4 14
628 109.59 radiation 1.0 10 < th dose dependent rect. 18 10
632 109.60 temperature 30.0 720 < th dose independent rect. 15 8
633 109.60 wind 7.0 10 < th dose independent rect. 18 10
634 109.60 atmosphere 1000.0 10 > th dose independent rect. 2 12
635 109.60 radiation 1.0 30 < th dose independent rect. 11 17
640 109.60 atmosphere 1005.0 30 > th dose dependent rect. 18 3
644 109.61 radiation 1.0 30 < th dose independent rect. 13 15
658 109.62 radiation 20.0 90 < th dose dependent rect. 10 17
659 109.63 humidity 50.0 720 > th dose independent rect. 19 16
662 109.64 atmosphere 1015.0 10 < th dose independent rect. 18 10
663 109.64 radiation 1.0 10 < th dose independent rect. 18 10
664 109.64 precipitation 0.1 10 < th dose independent rect. 18 10
667 109.64 precipitation 0.1 10 < th dose dependent rect. 18 10
672 109.65 atmosphere 1000.0 10 > th dose independent rect. 14 12
685 109.67 radiation 1.0 30 < th dose independent rect. 1 23
693 109.70 precipitation 0.1 720 < th dose independent rect. 11 8
698 109.70 precipitation 0.1 720 < th dose dependent rect. 11 8
702 109.71 precipitation 0.1 720 < th dose independent rect. 7 16
707 109.71 radiation 1.0 10 < th dose dependent rect. 15 13
712 109.71 precipitation 0.1 720 < th dose dependent rect. 7 16
761 109.73 radiation 40.0 30 < th dose independent rect. 14 12
772 109.74 humidity 90.0 30 < th dose independent rect. 18 5
773 109.74 temperature 10.0 10 > th dose independent rect. 18 10
780 109.74 temperature 10.0 10 > th dose independent rect. 4 14
782 109.74 atmosphere 1015.0 10 < th dose independent rect. 4 14
787 109.75 temperature 25.0 720 > th dose dependent rect. 6 1
788 109.75 temperature 25.0 720 > th dose dependent rect. 24 8
792 109.76 atmosphere 995.0 10 > th dose independent rect. 18 10
793 109.76 precipitation 0.1 10 < th dose independent rect. 4 14
798 109.76 precipitation 0.1 10 < th dose dependent rect. 4 14
809 109.77 temperature 10.0 30 > th dose dependent rect. 23 19
822 109.78 humidity 50.0 720 > th dose independent rect. 23 16
828 109.80 wind 9.0 720 < th dose independent rect. 19 16
832 109.80 wind 9.0 10 < th dose dependent rect. 18 10
833 109.80 temperature 10.0 30 > th dose dependent rect. 3 23
838 109.81 atmosphere 1005.0 30 > th dose dependent rect. 20 3
843 109.82 radiation 1.0 30 < th dose independent rect. 15 13
850 109.84 atmosphere 1015.0 1440 < th dose independent rect. 3 1
860 109.86 atmosphere 995.0 720 > th dose independent rect. 3 23
864 109.87 atmosphere 1000.0 720 > th dose independent rect. 19 6
868 109.87 temperature 10.0 30 > th dose dependent rect. 23 8
873 109.88 temperature 25.0 90 > th dose independent rect. 18 9
875 109.88 wind 9.0 720 < th dose independent rect. 23 16
892 109.89 humidity 60.0 10 > th dose independent rect. 14 12
898 109.89 atmosphere 995.0 720 > th dose independent rect. 15 23
900 109.89 temperature 10.0 30 > th dose dependent rect. 18 10
912 109.91 atmosphere 1000.0 720 > th dose independent rect. 19 14
915 109.91 temperature 10.0 720 > th dose dependent rect. 23 1
923 109.92 atmosphere 995.0 1440 > th dose independent rect. 3 12
943 109.93 wind 5.0 10 < th dose independent rect. 15 13
945 109.93 humidity 50.0 30 > th dose independent rect. 4 14
949 109.93 wind 1.0 10 > th dose independent rect. 23 23
962 109.93 temperature 25.0 10 > th dose dependent rect. 24 11
966 109.94 wind 1.0 720 > th dose independent rect. 11 8
967 109.94 temperature 30.0 10 < th dose independent rect. 2 12
974 109.94 temperature 20.0 10 > th dose dependent rect. 4 3
980 109.95 atmosphere 995.0 720 > th dose independent rect. 14 1
989 109.96 temperature 10.0 10 > th dose independent rect. 2 12
991 109.96 temperature 10.0 10 > th dose independent rect. 14 12
994 109.96 atmosphere 1015.0 10 < th dose independent rect. 2 12