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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0663900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Phosphoribosyltransferase (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.19 (0.02) R2 : 0.000798
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0254 (0.0421) R2dN8 : 0.00103 R2N8 : 0.000798
σ : 0.377
deviance : 65.24
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
57.76 0.357 3.16 0.448 0.1 0.388 -0.263 0.229 0.192 8 22.6 6468 -- --
57.82 0.354 3.15 0.531 0.107 0.385 -0.249 -- 0.209 7.86 22.2 6504 -- --
57.92 0.354 3.16 0.463 0.104 0.416 -- 0.29 0.195 7.9 22.3 7121 -- --
58.01 0.355 3.15 0.538 0.0997 0.395 -- -- 0.215 8.02 22.3 6515 -- --
58.36 0.356 3.17 0.514 -- 0.489 -- 0.449 0.194 -- 21.5 8172 -- --
62.14 0.37 3.18 0.302 0.106 -- -0.233 -- 0.057 8.44 -- -- -- --
62.31 0.37 3.18 0.295 0.106 -- -- -- 0.0572 8.61 -- -- -- --
58.55 0.356 3.15 0.54 -- 0.4 -- -- 0.217 -- 22.3 6515 -- --
63.4 0.371 3.18 -- 0.102 0.183 -- -- 0.0866 8.61 28.6 7615 -- --
62.94 0.371 3.18 0.295 -- -- -- -- 0.0582 -- -- -- -- --
64.6 0.376 3.19 -- 0.107 -- -- -- 0.0244 8.4 -- -- -- --
63.88 0.372 3.18 -- -- 0.177 -- -- 0.078 -- 28.52 7855 -- --
65.24 0.377 3.19 -- -- -- -- -- 0.0254 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 56.44 wind 9.0 90 > th dose dependent rect. 10 1
2 56.52 wind 1.0 1440 > th dose independent rect. 17 1
16 56.74 wind 5.0 720 > th dose independent rect. 4 1
17 56.74 wind 5.0 720 > th dose dependent rect. 4 1
18 56.82 humidity 90.0 1440 > th dose dependent rect. 16 1
19 56.83 wind 9.0 90 > th dose independent rect. 10 1
43 57.04 wind 7.0 10 > th dose dependent rect. 11 1
69 57.19 wind 9.0 10 > th dose independent rect. 11 1
76 57.22 precipitation 0.1 1440 > th dose independent rect. 15 1
77 57.22 precipitation 0.1 1440 > th dose dependent rect. 15 1
86 57.31 precipitation 0.1 1440 < th dose independent rect. 15 1
87 57.31 wind 1.0 1440 > th dose independent rect. 15 3
88 57.31 precipitation 0.1 1440 < th dose dependent rect. 15 1
91 57.35 wind 9.0 90 > th dose independent rect. 18 17
95 57.43 wind 9.0 90 > th dose dependent rect. 18 17
108 57.50 atmosphere 1010.0 90 < th dose independent rect. 3 10
114 57.57 wind 3.0 14400 < th dose dependent rect. 21 1
134 57.67 temperature 25.0 4320 < th dose independent rect. 11 1
136 57.68 temperature 25.0 4320 > th dose independent rect. 11 1
139 57.69 atmosphere 1010.0 30 < th dose independent rect. 3 17
152 57.74 atmosphere 1010.0 30 < th dose independent rect. 3 20
155 57.75 wind 3.0 1440 < th dose dependent rect. 14 5
188 57.81 atmosphere 1005.0 10 > th dose dependent rect. 24 16
196 57.82 atmosphere 1005.0 10 > th dose dependent rect. 24 13
199 57.84 humidity 90.0 1440 > th dose independent rect. 16 1
203 57.85 wind 9.0 90 > th dose independent sin 7 NA
223 57.87 atmosphere 1005.0 90 > th dose dependent rect. 24 12
253 57.88 humidity 90.0 270 > th dose dependent rect. 9 1
262 57.89 temperature 25.0 4320 > th dose independent rect. 10 8
269 57.90 precipitation 0.1 14400 < th dose independent rect. 20 1
274 57.90 precipitation 0.1 14400 < th dose dependent rect. 20 1
277 57.90 humidity 90.0 270 > th dose dependent rect. 9 4
281 57.91 temperature 25.0 4320 < th dose independent rect. 15 1
288 57.91 temperature 20.0 720 > th dose dependent rect. 18 19
304 57.95 precipitation 0.1 14400 > th dose independent rect. 20 1
349 57.98 humidity 90.0 1440 > th dose dependent rect. 10 7
353 57.99 temperature 25.0 4320 < th dose independent rect. 10 8
364 58.00 wind 1.0 14400 > th dose independent rect. 20 3
375 58.01 temperature 25.0 4320 > th dose independent rect. 15 1
376 58.01 temperature 25.0 4320 < th dose independent rect. 10 6
385 58.02 wind 5.0 30 < th dose independent rect. 3 11
386 58.02 temperature 20.0 1440 > th dose dependent rect. 22 1
396 58.04 wind 9.0 10 > th dose independent rect. 18 18
417 58.05 wind 7.0 10 > th dose dependent rect. 18 18
422 58.06 wind 1.0 43200 < th dose dependent rect. 14 1
425 58.06 temperature 15.0 90 > th dose dependent rect. 3 20
426 58.07 wind 9.0 90 < th dose independent sin 6 NA
439 58.08 wind 3.0 1440 < th dose dependent rect. 15 1
444 58.09 temperature 25.0 1440 < th dose independent rect. 19 2
449 58.09 wind 7.0 90 > th dose dependent sin 5 NA
456 58.10 temperature 25.0 10 < th dose independent rect. 12 1
522 58.14 temperature 10.0 10 > th dose dependent rect. 3 23
539 58.15 temperature 10.0 90 > th dose dependent rect. 3 22
543 58.16 temperature 25.0 1440 < th dose independent rect. 18 4
554 58.16 temperature 20.0 1440 > th dose dependent rect. 20 14
565 58.17 wind 7.0 10 > th dose dependent sin 4 NA
581 58.18 temperature 25.0 1440 < th dose independent rect. 17 6
590 58.18 wind 9.0 10 < th dose dependent rect. 3 11
654 58.20 temperature 10.0 270 > th dose dependent rect. 1 22
663 58.21 temperature 20.0 1440 > th dose dependent sin 10 NA
665 58.21 temperature 25.0 4320 < th dose dependent rect. 15 6
667 58.21 temperature 20.0 1440 > th dose dependent rect. 17 11
695 58.23 humidity 90.0 270 > th dose independent rect. 9 1
716 58.23 temperature 20.0 1440 > th dose dependent rect. 2 8
726 58.24 temperature 25.0 4320 > th dose independent sin 23 NA
739 58.24 temperature 20.0 1440 > th dose dependent rect. 7 1
740 58.24 temperature 30.0 1440 < th dose dependent rect. 7 1
741 58.24 temperature 25.0 4320 < th dose dependent rect. 20 1
742 58.24 temperature 20.0 1440 > th dose dependent rect. 3 6
760 58.25 wind 9.0 10 > th dose independent sin 2 NA
764 58.25 temperature 25.0 4320 < th dose independent sin 23 NA
830 58.27 temperature 20.0 1440 > th dose dependent rect. 4 4
848 58.28 wind 3.0 43200 > th dose independent rect. 9 1
849 58.28 wind 3.0 43200 < th dose independent rect. 9 1
850 58.28 atmosphere 1010.0 720 < th dose independent rect. 3 1
895 58.29 temperature 25.0 4320 < th dose dependent rect. 18 3
904 58.29 temperature 25.0 4320 < th dose dependent rect. 9 13
921 58.30 wind 1.0 14400 < th dose independent rect. 21 1
922 58.30 humidity 90.0 14400 < th dose independent rect. 22 1
924 58.30 atmosphere 1010.0 720 < th dose independent rect. 1 3
925 58.30 temperature 25.0 1440 > th dose independent rect. 17 6
938 58.30 temperature 30.0 1440 < th dose dependent rect. 7 3
960 58.31 temperature 25.0 1440 > th dose independent rect. 18 4