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Os02g0661000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Pex19 protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.1 (0.0122) R2 : 0.132
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.215 (0.0258) R2dN8 : 0.171 R2N8 : 0.132
σ : 0.231
deviance : 24.42
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
11.88 0.162 12.2 0.0587 0.339 0.294 0.189 1.27 0.196 22.2 29.2 3507 -- --
12.13 0.162 12.1 0.318 0.341 0.423 0.191 -- 0.248 22.1 29.2 3511 -- --
12.02 0.161 12.2 0.0628 0.337 0.296 -- 1.2 0.197 22.2 29.22 3481 -- --
12.16 0.162 12.1 0.319 0.322 0.399 -- -- 0.26 22 28.73 4515 -- --
17.82 0.197 12.2 0.0319 -- 0.213 -- 1.04 0.186 -- 29.67 5918 -- --
17.53 0.196 12.2 0.208 0.309 -- 0.129 -- 0.238 22 -- -- -- --
17.59 0.196 12.2 0.203 0.308 -- -- -- 0.238 21.9 -- -- -- --
17.67 0.196 12.1 0.298 -- 0.347 -- -- 0.288 -- 29.6 7313 -- --
14.29 0.176 12.2 -- 0.315 0.294 -- -- 0.226 21.9 29.2 5978 -- --
23.3 0.226 12.1 0.206 -- -- -- -- 0.238 -- -- -- -- --
18.68 0.202 12.2 -- 0.309 -- -- -- 0.215 22 -- -- -- --
20.14 0.209 12.1 -- -- 0.289 -- -- 0.219 -- 29.35 5920 -- --
24.42 0.231 12.1 -- -- -- -- -- 0.215 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 10.77 precipitation 0.1 43200 > th dose dependent rect. 14 4
3 10.79 precipitation 0.1 43200 > th dose dependent rect. 17 4
17 11.06 precipitation 0.1 43200 > th dose independent rect. 17 2
19 11.07 precipitation 0.1 43200 < th dose independent rect. 17 2
20 11.07 precipitation 0.1 43200 < th dose dependent rect. 17 2
28 11.26 precipitation 0.1 43200 > th dose independent rect. 17 4
30 11.27 precipitation 0.1 43200 < th dose independent rect. 17 4
31 11.27 precipitation 0.1 43200 < th dose dependent rect. 17 4
47 11.44 temperature 30.0 14400 < th dose independent rect. 18 15
50 11.46 atmosphere 1000.0 43200 > th dose independent rect. 12 1
56 11.48 atmosphere 1000.0 43200 < th dose independent rect. 12 1
57 11.50 precipitation 0.1 43200 > th dose independent rect. 19 2
61 11.51 precipitation 0.1 43200 < th dose independent rect. 19 2
62 11.51 precipitation 0.1 43200 < th dose dependent rect. 19 2
63 11.51 wind 9.0 43200 > th dose dependent rect. 20 10
69 11.55 atmosphere 1000.0 43200 < th dose independent rect. 18 1
70 11.55 atmosphere 1000.0 43200 > th dose independent rect. 12 5
71 11.55 atmosphere 1000.0 43200 < th dose independent rect. 12 5
75 11.55 wind 9.0 43200 > th dose independent rect. 20 10
76 11.55 wind 9.0 43200 < th dose independent rect. 20 10
77 11.55 temperature 30.0 14400 > th dose independent rect. 17 16
90 11.57 atmosphere 1000.0 43200 < th dose independent rect. 11 9
140 11.59 atmosphere 1000.0 43200 < th dose independent rect. 4 17
142 11.60 atmosphere 1000.0 43200 > th dose independent sin 22 NA
145 11.60 atmosphere 1000.0 43200 < th dose independent sin 21 NA
168 11.60 atmosphere 1000.0 43200 > th dose independent rect. 4 13
174 11.60 atmosphere 1000.0 43200 < th dose independent rect. 3 14
195 11.60 temperature 30.0 14400 < th dose independent rect. 15 18
199 11.60 temperature 30.0 14400 > th dose independent rect. 15 19
209 11.61 atmosphere 1000.0 43200 > th dose independent rect. 4 1
262 11.61 temperature 30.0 14400 > th dose dependent rect. 17 17
267 11.62 atmosphere 1000.0 43200 > th dose independent rect. 19 1
313 11.62 precipitation 0.1 43200 > th dose dependent rect. 7 14
370 11.63 atmosphere 1000.0 43200 < th dose independent rect. 18 23
371 11.63 temperature 25.0 14400 > th dose dependent rect. 19 1
375 11.64 atmosphere 1000.0 43200 < th dose independent no NA NA
376 11.64 atmosphere 1000.0 43200 < th dose independent rect. 4 1
385 11.64 atmosphere 1000.0 43200 < th dose independent rect. 3 11
413 11.64 atmosphere 1000.0 43200 < th dose independent rect. 10 19
441 11.64 atmosphere 1000.0 43200 > th dose independent rect. 18 23
460 11.65 temperature 30.0 14400 > th dose independent sin 11 NA
461 11.65 temperature 30.0 14400 < th dose independent sin 11 NA
465 11.65 atmosphere 1000.0 43200 > th dose independent no NA NA
479 11.65 atmosphere 1000.0 43200 > th dose independent rect. 2 11
527 11.65 atmosphere 1000.0 43200 < th dose independent rect. 18 20
550 11.65 atmosphere 1000.0 43200 > th dose independent rect. 16 22
557 11.65 atmosphere 1000.0 43200 < th dose independent rect. 15 22
570 11.65 atmosphere 1000.0 43200 > th dose independent rect. 14 23
601 11.66 atmosphere 1000.0 43200 < th dose independent rect. 16 5
666 11.67 atmosphere 1000.0 43200 > th dose independent rect. 16 1
667 11.67 atmosphere 1000.0 43200 < th dose independent rect. 16 1
699 11.67 atmosphere 1000.0 43200 > th dose independent rect. 18 19
727 11.68 temperature 30.0 14400 < th dose independent rect. 15 4
862 11.70 temperature 30.0 14400 > th dose independent rect. 15 4
866 11.70 atmosphere 1000.0 43200 > th dose independent rect. 16 5
903 11.70 atmosphere 1000.0 43200 < th dose independent rect. 18 14
907 11.70 atmosphere 1000.0 43200 < th dose independent rect. 16 15
911 11.70 atmosphere 1000.0 43200 > th dose independent rect. 16 16
928 11.70 temperature 25.0 4320 > th dose dependent rect. 7 2