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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0659100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, C2H2-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.97 (0.0193) R2 : 0.0681
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.234 (0.0405) R2dN8 : 0.0879 R2N8 : 0.0681
σ : 0.363
deviance : 60.38
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
52.26 0.337 2.97 -0.0406 0.408 0.215 -0.69 -0.461 0.204 8.26 10 10 -- --
52.76 0.341 2.97 -0.0113 0.387 0.18 -0.324 -- 0.216 7.77 10 10 -- --
52.9 0.341 2.97 -0.0311 0.4 0.203 -- -0.138 0.213 8.13 10 10 -- --
53.03 0.341 2.97 -0.0202 0.398 0.202 -- -- 0.215 8.13 10 10 -- --
59.76 0.36 2.98 -0.00874 -- 0.0865 -- -0.0433 0.229 -- 17.85 11 -- --
53.92 0.344 2.97 -0.00543 0.341 -- -0.464 -- 0.225 5.93 -- -- -- --
54.44 0.346 2.97 -0.00897 0.338 -- -- -- 0.226 6.01 -- -- -- --
59.69 0.36 2.97 0.00495 -- 0.0844 -- -- 0.236 -- 14.8 20 -- --
53.04 0.341 2.97 -- 0.397 0.201 -- -- 0.217 8.13 10 10 -- --
60.38 0.363 2.97 0.000899 -- -- -- -- 0.234 -- -- -- -- --
54.44 0.345 2.97 -- 0.338 -- -- -- 0.227 6.01 -- -- -- --
55.92 0.348 2.94 -- -- 0.308 -- -- 0.306 -- 12.96 731 -- --
60.38 0.363 2.97 -- -- -- -- -- 0.234 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 43.13 temperature 25.0 10 > th dose independent rect. 3 4
5 44.64 temperature 25.0 30 > th dose dependent rect. 4 1
6 44.65 temperature 25.0 10 > th dose independent rect. 4 1
11 44.73 humidity 90.0 10 < th dose independent rect. 4 1
16 45.02 atmosphere 1005.0 270 > th dose dependent rect. 1 4
19 45.14 wind 1.0 30 > th dose dependent rect. 4 1
35 45.47 wind 1.0 30 > th dose independent rect. 4 1
36 45.48 humidity 90.0 90 < th dose dependent rect. 4 1
57 45.80 humidity 90.0 10 < th dose dependent rect. 4 1
64 45.91 atmosphere 1005.0 10 > th dose dependent rect. 4 1
65 45.93 wind 3.0 30 < th dose dependent rect. 4 1
73 46.07 wind 5.0 30 < th dose independent rect. 4 1
76 46.07 atmosphere 1015.0 30 < th dose dependent rect. 4 1
77 46.08 temperature 30.0 30 < th dose dependent rect. 4 1
78 46.08 humidity 80.0 30 > th dose dependent rect. 4 1
82 46.09 atmosphere 1000.0 30 > th dose independent rect. 4 1
85 46.09 humidity 50.0 30 > th dose dependent rect. 4 1
89 46.10 temperature 10.0 30 > th dose independent rect. 4 1
91 46.10 temperature 30.0 30 < th dose independent rect. 4 1
92 46.10 humidity 50.0 30 > th dose independent rect. 4 1
96 46.10 atmosphere 1010.0 30 < th dose independent rect. 4 1
98 46.10 radiation 1.0 30 < th dose independent rect. 4 1
103 46.10 temperature 10.0 30 > th dose independent rect. 5 23
105 46.10 radiation 1.0 30 < th dose dependent rect. 4 1
113 46.12 precipitation 0.1 30 < th dose independent rect. 4 1
114 46.12 atmosphere 995.0 30 > th dose dependent rect. 4 1
115 46.12 precipitation 0.1 30 < th dose dependent rect. 4 1
116 46.13 temperature 10.0 30 > th dose dependent rect. 4 1
118 46.15 wind 7.0 1440 < th dose independent rect. 5 1
120 46.15 temperature 10.0 1440 > th dose independent rect. 5 1
123 46.15 temperature 30.0 1440 < th dose independent rect. 5 1
127 46.15 humidity 50.0 1440 > th dose independent rect. 5 1
136 46.15 atmosphere 995.0 1440 > th dose independent rect. 5 1
137 46.15 atmosphere 1015.0 1440 < th dose independent rect. 5 1
138 46.15 radiation 20.0 1440 < th dose independent rect. 5 1
147 46.15 temperature 10.0 1440 > th dose independent rect. 6 23
189 46.32 atmosphere 995.0 30 > th dose independent rect. 5 23
190 46.32 atmosphere 1005.0 10 > th dose dependent rect. 4 4
199 46.43 precipitation 0.1 30 < th dose independent rect. 5 23
200 46.43 precipitation 0.1 30 < th dose dependent rect. 5 23
209 46.62 humidity 90.0 10 < th dose independent rect. 4 3
210 46.66 wind 9.0 30 < th dose independent rect. 5 23
307 48.45 humidity 50.0 30 > th dose independent rect. 5 23
318 48.61 wind 1.0 10 > th dose independent rect. 4 3
357 48.87 radiation 10.0 10 < th dose independent rect. 4 3
392 49.10 radiation 10.0 10 > th dose independent rect. 6 1
418 49.10 radiation 10.0 10 > th dose dependent rect. 6 1
486 49.40 temperature 30.0 30 < th dose independent rect. 5 23
487 49.41 temperature 25.0 1440 < th dose independent rect. 1 4
525 49.60 wind 3.0 90 < th dose independent rect. 3 4
539 49.67 wind 9.0 4320 < th dose independent rect. 5 3
548 49.72 temperature 25.0 1440 < th dose independent rect. 1 1
570 49.81 atmosphere 1005.0 30 > th dose independent rect. 4 3
575 49.83 temperature 10.0 1440 > th dose independent rect. 5 3
578 49.83 temperature 30.0 1440 < th dose independent rect. 5 3
582 49.83 humidity 50.0 1440 > th dose independent rect. 5 3
587 49.83 atmosphere 995.0 1440 > th dose independent rect. 5 3
588 49.83 atmosphere 1015.0 1440 < th dose independent rect. 5 3
590 49.83 temperature 10.0 1440 > th dose independent rect. 8 21
614 49.92 atmosphere 1005.0 90 > th dose dependent rect. 6 1
624 49.96 humidity 50.0 90 > th dose independent rect. 7 20
626 49.97 wind 5.0 270 < th dose independent rect. 3 2
627 49.97 humidity 50.0 270 > th dose independent rect. 5 21
643 50.03 humidity 80.0 10 > th dose independent rect. 4 3
646 50.05 humidity 80.0 270 > th dose independent rect. 2 3
650 50.06 radiation 20.0 10 < th dose dependent rect. 4 3
658 50.09 wind 3.0 30 < th dose dependent rect. 6 1
676 50.17 wind 1.0 10 > th dose independent rect. 8 20
678 50.17 wind 7.0 90 < th dose dependent rect. 3 4
683 50.18 radiation 10.0 10 < th dose independent rect. 4 12
684 50.18 wind 1.0 30 > th dose independent rect. 5 23
709 50.24 radiation 10.0 90 < th dose independent rect. 3 9
715 50.25 precipitation 0.1 90 < th dose independent rect. 3 4
718 50.25 precipitation 0.1 90 < th dose dependent rect. 3 4
723 50.27 radiation 10.0 90 < th dose independent rect. 3 4
728 50.28 atmosphere 995.0 270 > th dose independent rect. 5 21
730 50.28 radiation 1.0 270 < th dose dependent rect. 3 2
734 50.29 wind 9.0 90 < th dose independent rect. 7 20
737 50.30 temperature 10.0 90 > th dose independent rect. 3 4
739 50.30 temperature 30.0 90 < th dose independent rect. 3 4
740 50.30 humidity 50.0 90 > th dose independent rect. 3 4
744 50.30 atmosphere 1015.0 90 < th dose independent rect. 3 4
745 50.30 radiation 40.0 90 < th dose independent rect. 3 4
746 50.30 temperature 10.0 90 > th dose independent rect. 7 20
756 50.31 radiation 10.0 10 < th dose independent rect. 2 6
760 50.31 atmosphere 995.0 90 > th dose independent rect. 7 20
764 50.32 radiation 1.0 270 < th dose independent rect. 3 2
773 50.33 temperature 25.0 720 < th dose independent rect. 22 5
778 50.34 precipitation 0.1 270 < th dose independent rect. 3 2
780 50.34 precipitation 0.1 90 < th dose independent rect. 7 20
782 50.34 precipitation 0.1 270 < th dose dependent rect. 3 2
783 50.34 precipitation 0.1 90 < th dose dependent rect. 7 20
790 50.35 humidity 80.0 30 > th dose dependent rect. 6 1
804 50.37 temperature 10.0 270 > th dose independent rect. 3 2
806 50.37 temperature 30.0 270 < th dose independent rect. 3 2
808 50.37 humidity 50.0 270 > th dose independent rect. 3 2
812 50.37 atmosphere 1010.0 270 < th dose independent rect. 3 2
817 50.37 temperature 10.0 270 > th dose independent rect. 5 22
828 50.38 wind 9.0 270 < th dose independent rect. 5 22
855 50.40 wind 1.0 10 > th dose independent rect. 4 16
856 50.40 wind 1.0 90 > th dose independent rect. 7 20
889 50.45 temperature 30.0 90 < th dose independent rect. 7 20
897 50.46 precipitation 0.1 270 < th dose independent rect. 5 21
904 50.46 precipitation 0.1 270 < th dose dependent rect. 5 21
906 50.47 precipitation 0.1 10 < th dose independent rect. 4 3
909 50.47 precipitation 0.1 10 < th dose independent rect. 7 21
910 50.47 humidity 80.0 4320 < th dose dependent rect. 1 3
911 50.47 precipitation 0.1 10 < th dose dependent rect. 4 3
912 50.47 precipitation 0.1 10 < th dose dependent rect. 7 21
946 50.51 atmosphere 1015.0 30 < th dose independent rect. 5 23
947 50.51 temperature 30.0 30 < th dose dependent rect. 6 1
974 50.52 temperature 25.0 1440 > th dose dependent rect. 4 1
998 50.55 radiation 10.0 90 < th dose independent rect. 3 12