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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0658900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Sec20 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.18 (0.033) R2 : 0.297
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.575 (0.0777) R2dC : 0.0849 R2C : 0.0529
β3 : -1.28 (0.129) R2dE : 0.166 R2E : 0.0613
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.602 (0.0714) R2dN8 : 0.154 R2N8 : 0.0453
σ : 0.613
deviance : 173.49
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_____
C
peak time of C : 11.8
E
wheather : precipitation
threshold : 0.2414
memory length : 5767
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
173.15 0.618 6.2 0.0983 0.574 -1.15 -0.00151 -1.06 -0.572 11.7 0.1181 4325 -- --
173.57 0.614 6.18 0.0765 0.535 -1.27 0.00146 -- -0.594 11.7 0.281 5768 -- --
173.15 0.613 6.2 0.0983 0.574 -1.15 -- -1.05 -0.572 11.7 0.126 4325 -- --
173.37 0.613 6.18 0.0687 0.573 -1.31 -- -- -0.596 11.9 0.2569 5765 -- --
193.34 0.648 6.21 0.0866 -- -1.14 -- -1.07 -0.58 -- 0.1805 4528 -- --
209.22 0.678 6.15 -0.287 0.578 -- 0.14 -- -0.443 11.9 -- -- -- --
209.3 0.677 6.15 -0.282 0.577 -- -- -- -0.443 11.8 -- -- -- --
194.13 0.649 6.19 0.113 -- -1.29 -- -- -0.586 -- 0.2877 5150 -- --
173.49 0.613 6.18 -- 0.575 -1.28 -- -- -0.602 11.8 0.2414 5767 -- --
230.28 0.709 6.16 -0.299 -- -- -- -- -0.45 -- -- -- -- --
211.4 0.68 6.14 -- 0.581 -- -- -- -0.411 11.9 -- -- -- --
194.36 0.649 6.19 -- -- -1.31 -- -- -0.596 -- 0.2699 5249 -- --
232.64 0.712 6.15 -- -- -- -- -- -0.417 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 171.77 precipitation 0.1 4320 > th dose independent rect. 3 15
2 171.78 precipitation 0.1 4320 < th dose independent rect. 3 16
3 171.78 precipitation 0.1 4320 < th dose dependent rect. 3 16
7 171.91 precipitation 0.1 4320 > th dose dependent sin 2 NA
8 172.05 precipitation 0.1 4320 > th dose dependent rect. 24 21
9 172.07 precipitation 0.1 4320 < th dose independent rect. 24 19
10 172.07 precipitation 0.1 4320 < th dose dependent rect. 24 19
12 172.10 precipitation 0.1 4320 > th dose independent rect. 24 19
20 172.50 precipitation 0.1 4320 > th dose dependent rect. 13 19
21 172.51 precipitation 0.1 4320 > th dose dependent rect. 16 16
79 173.01 precipitation 0.1 4320 > th dose dependent rect. 15 23
103 173.17 precipitation 0.1 4320 > th dose dependent no NA NA
126 173.28 precipitation 0.1 4320 > th dose dependent rect. 3 23
150 173.56 precipitation 0.1 4320 > th dose independent sin 1 NA
156 173.58 precipitation 0.1 4320 < th dose independent sin 1 NA
158 173.58 precipitation 0.1 4320 < th dose dependent sin 1 NA
166 173.61 precipitation 0.1 4320 > th dose dependent rect. 19 23
179 173.84 temperature 30.0 720 > th dose independent rect. 9 8
210 174.01 precipitation 0.1 4320 > th dose dependent sin 13 NA
215 174.10 precipitation 0.1 14400 > th dose independent rect. 19 2
220 174.12 precipitation 0.1 14400 < th dose independent rect. 19 2
221 174.12 precipitation 0.1 14400 < th dose dependent rect. 19 2
251 174.30 precipitation 0.1 4320 < th dose independent rect. 16 16
252 174.30 precipitation 0.1 4320 < th dose dependent rect. 16 16
253 174.31 precipitation 0.1 14400 < th dose independent rect. 17 4
254 174.31 precipitation 0.1 14400 < th dose dependent rect. 17 4
258 174.37 precipitation 0.1 4320 > th dose independent rect. 16 16
276 174.51 precipitation 0.1 14400 > th dose independent rect. 17 4
283 174.53 temperature 30.0 720 < th dose independent rect. 9 15
308 174.76 temperature 30.0 720 > th dose independent sin 0 NA
321 174.84 humidity 80.0 4320 < th dose independent rect. 18 2
330 174.96 precipitation 0.1 4320 < th dose independent rect. 13 7
331 174.96 precipitation 0.1 4320 < th dose dependent rect. 13 7
332 174.99 humidity 60.0 4320 > th dose independent rect. 13 1
343 175.09 temperature 30.0 720 < th dose independent rect. 7 22
367 175.20 precipitation 0.1 4320 > th dose independent rect. 13 7
395 175.30 temperature 30.0 720 < th dose independent rect. 17 22
444 175.44 temperature 30.0 720 > th dose independent no NA NA
536 175.45 humidity 80.0 4320 > th dose independent rect. 19 1
572 175.53 temperature 25.0 720 > th dose dependent rect. 1 10
597 175.58 temperature 30.0 720 < th dose independent rect. 24 17
598 175.60 temperature 30.0 720 < th dose independent no NA NA
617 175.65 temperature 30.0 720 > th dose independent rect. 12 23
623 175.67 temperature 30.0 720 > th dose independent rect. 14 23
635 175.72 temperature 30.0 720 < th dose independent rect. 9 9
685 175.84 precipitation 0.1 4320 > th dose independent rect. 3 23
692 175.87 temperature 30.0 720 > th dose independent rect. 14 3
708 175.90 precipitation 0.1 4320 < th dose independent rect. 3 23
713 175.90 precipitation 0.1 4320 < th dose dependent rect. 3 23
717 175.91 precipitation 0.1 14400 > th dose dependent rect. 19 2
730 175.93 precipitation 0.1 14400 < th dose independent rect. 17 9
733 175.93 precipitation 0.1 14400 < th dose dependent rect. 17 9
737 175.94 temperature 30.0 720 < th dose independent rect. 24 21
763 175.97 temperature 30.0 720 > th dose dependent rect. 8 9
779 175.98 precipitation 0.1 14400 > th dose independent rect. 17 9
790 175.99 temperature 30.0 720 < th dose independent rect. 7 14
806 176.02 temperature 30.0 720 < th dose independent rect. 9 12
821 176.05 temperature 30.0 720 < th dose independent rect. 11 23
943 176.22 precipitation 0.1 14400 < th dose independent rect. 13 13
946 176.22 temperature 30.0 720 < th dose independent rect. 1 23
949 176.22 precipitation 0.1 14400 < th dose dependent rect. 13 13
962 176.24 precipitation 0.1 14400 > th dose independent rect. 13 13
975 176.26 precipitation 0.1 4320 > th dose independent no NA NA
976 176.26 precipitation 0.1 4320 < th dose independent no NA NA
978 176.26 temperature 30.0 720 < th dose independent rect. 19 20
982 176.26 precipitation 0.1 4320 < th dose dependent no NA NA
988 176.27 precipitation 0.1 14400 < th dose independent sin 17 NA
994 176.27 precipitation 0.1 14400 < th dose dependent sin 17 NA