Os02g0657700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0657700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36.49 | 0.284 | 13 | -0.516 | 0.649 | -0.507 | -0.599 | 1.09 | -0.202 | 12.8 | 20.4 | 620 | -- | -- |
| 35.98 | 0.279 | 13 | -0.574 | 0.637 | -0.849 | -0.903 | -- | -0.247 | 12.4 | 19.28 | 2109 | -- | -- |
| 37.63 | 0.286 | 13 | -0.497 | 0.637 | -0.509 | -- | 1.23 | -0.19 | 12.8 | 20.55 | 676 | -- | -- |
| 38.57 | 0.289 | 13 | -0.556 | 0.618 | -0.884 | -- | -- | -0.215 | 12.5 | 19.1 | 2269 | -- | -- |
| 61.26 | 0.365 | 13 | -0.416 | -- | -0.652 | -- | 1.27 | -0.183 | -- | 20.8 | 869 | -- | -- |
| 50.9 | 0.334 | 13 | -0.929 | 0.689 | -- | -0.833 | -- | -0.377 | 12.4 | -- | -- | -- | -- |
| 53.85 | 0.344 | 13 | -0.96 | 0.693 | -- | -- | -- | -0.381 | 12.6 | -- | -- | -- | -- |
| 62.88 | 0.369 | 13 | -0.56 | -- | -1.03 | -- | -- | -0.203 | -- | 19.6 | 909 | -- | -- |
| 41.81 | 0.301 | 13 | -- | 0.711 | -1.04 | -- | -- | -0.102 | 12.6 | 18.01 | 21048 | -- | -- |
| 83.95 | 0.428 | 13 | -0.984 | -- | -- | -- | -- | -0.392 | -- | -- | -- | -- | -- |
| 78.14 | 0.414 | 13 | -- | 0.707 | -- | -- | -- | -0.274 | 12.6 | -- | -- | -- | -- |
| 69.67 | 0.389 | 13 | -- | -- | -1.06 | -- | -- | -0.108 | -- | 17.8 | 22572 | -- | -- |
| 109.5 | 0.488 | 13 | -- | -- | -- | -- | -- | -0.283 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 34.98 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 2 | 35.10 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 3 | 35.16 | temperature | 20.0 | 720 | < th | dose independent | sin | 10 | NA |
| 4 | 35.18 | temperature | 20.0 | 720 | < th | dose independent | rect. | 19 | 15 |
| 35 | 35.65 | temperature | 20.0 | 720 | > th | dose independent | rect. | 19 | 16 |
| 62 | 35.94 | temperature | 20.0 | 720 | > th | dose independent | sin | 9 | NA |
| 113 | 36.35 | temperature | 20.0 | 720 | > th | dose independent | rect. | 19 | 12 |
| 115 | 36.36 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 116 | 36.37 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 22 | 2 |
| 143 | 36.52 | temperature | 20.0 | 720 | > th | dose independent | rect. | 16 | 15 |
| 173 | 36.63 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 22 | 12 |
| 175 | 36.64 | temperature | 20.0 | 720 | > th | dose independent | rect. | 21 | 10 |
| 180 | 36.65 | temperature | 20.0 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 204 | 36.73 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 22 | 1 |
| 323 | 37.05 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 18 | 5 |
| 345 | 37.11 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 350 | 37.11 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 376 | 37.17 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 19 | 15 |
| 382 | 37.18 | temperature | 20.0 | 720 | > th | dose independent | rect. | 8 | 23 |
| 426 | 37.28 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 432 | 37.28 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 462 | 37.35 | temperature | 25.0 | 720 | < th | dose dependent | sin | 9 | NA |
| 496 | 37.41 | temperature | 20.0 | 720 | > th | dose independent | no | NA | NA |
| 503 | 37.43 | temperature | 20.0 | 720 | < th | dose independent | no | NA | NA |
| 517 | 37.45 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 18 | 6 |
| 524 | 37.45 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 4 | 11 |
| 533 | 37.47 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 1 | 7 |
| 534 | 37.47 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 1 | 7 |
| 536 | 37.47 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 1 | 7 |
| 547 | 37.51 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 581 | 37.58 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 23 | 16 |
| 587 | 37.59 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 3 | NA |
| 588 | 37.59 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 1 | 7 |
| 602 | 37.62 | radiation | 30.0 | 4320 | < th | dose independent | rect. | 16 | 16 |
| 650 | 37.67 | temperature | 20.0 | 720 | > th | dose independent | rect. | 1 | 23 |
| 663 | 37.69 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 23 | 16 |
| 666 | 37.69 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 693 | 37.72 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 23 | 1 |
| 700 | 37.72 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 23 | 19 |
| 741 | 37.77 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 7 | 2 |
| 758 | 37.80 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 767 | 37.80 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 804 | 37.84 | temperature | 25.0 | 4320 | < th | dose dependent | rect. | 9 | 2 |
| 816 | 37.85 | radiation | 10.0 | 4320 | > th | dose dependent | rect. | 17 | 13 |
| 829 | 37.86 | temperature | 20.0 | 720 | < th | dose independent | rect. | 1 | 23 |
| 877 | 37.91 | temperature | 20.0 | 720 | > th | dose independent | rect. | 3 | 23 |
| 882 | 37.91 | radiation | 20.0 | 4320 | > th | dose dependent | rect. | 16 | 16 |
| 884 | 37.92 | temperature | 20.0 | 4320 | > th | dose independent | sin | 15 | NA |
| 913 | 37.95 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 18 | 1 |
| 939 | 37.97 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 9 | 3 |
| 968 | 37.99 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 19 | 16 |
| 999 | 38.01 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 5 | 5 |