Os02g0657600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : N-acetyl glutamate kinase 2.
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Os02g0657600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : N-acetyl glutamate kinase 2.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 61.96 | 0.37 | 10 | 1.47 | 0.65 | -1.16 | 1.01 | 0.0238 | 0.0778 | 15.7 | 15.86 | 10 | -- | -- |
| 61.95 | 0.367 | 10 | 1.47 | 0.659 | -1.17 | 1.02 | -- | 0.0817 | 15.7 | 16.09 | 12 | -- | -- |
| 63.82 | 0.372 | 9.98 | 1.62 | 0.648 | -1.06 | -- | 0.975 | 0.114 | 16 | 17.5 | 14 | -- | -- |
| 64.59 | 0.374 | 10 | 1.49 | 0.661 | -1 | -- | -- | 0.0628 | 16.6 | 16.65 | 113 | -- | -- |
| 79.94 | 0.416 | 10 | 1.48 | -- | -0.503 | -- | 1.11 | 0.00719 | -- | 15.4 | 10 | -- | -- |
| 76.86 | 0.411 | 10 | 1.25 | 0.356 | -- | 0.568 | -- | -0.0946 | 16.8 | -- | -- | -- | -- |
| 77.3 | 0.412 | 10 | 1.25 | 0.374 | -- | -- | -- | -0.0921 | 17.6 | -- | -- | -- | -- |
| 74 | 0.401 | 10 | 1.5 | -- | -0.718 | -- | -- | 0.0455 | -- | 16.58 | 1345 | -- | -- |
| 115.82 | 0.504 | 10.1 | -- | 0.455 | -0.396 | -- | -- | -0.173 | 16.8 | 18.83 | 125 | -- | -- |
| 84.55 | 0.43 | 10 | 1.23 | -- | -- | -- | -- | -0.101 | -- | -- | -- | -- | -- |
| 118.26 | 0.509 | 10.1 | -- | 0.354 | -- | -- | -- | -0.231 | 17.7 | -- | -- | -- | -- |
| 123.42 | 0.517 | 10.1 | -- | -- | -0.189 | -- | -- | -0.203 | -- | 21.6 | 1301 | -- | -- |
| 124.76 | 0.521 | 10.1 | -- | -- | -- | -- | -- | -0.238 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 56.36 | temperature | 20 | 270 | > th | dose dependent | sin | 7 | NA |
| 3 | 57.07 | temperature | 20 | 270 | > th | dose dependent | rect. | 21 | 14 |
| 47 | 59.44 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 72 | 59.99 | temperature | 15 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 96 | 60.50 | temperature | 30 | 270 | < th | dose dependent | sin | 8 | NA |
| 135 | 61.14 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 166 | 61.48 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 21 |
| 242 | 62.03 | temperature | 15 | 10 | > th | dose dependent | no | NA | NA |
| 256 | 62.15 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 17 |
| 260 | 62.17 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 6 |
| 337 | 62.54 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 23 |
| 366 | 62.68 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 22 |
| 380 | 62.74 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 401 | 62.82 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 413 | 62.86 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 22 |
| 419 | 62.89 | temperature | 30 | 10 | < th | dose dependent | rect. | 14 | 22 |
| 431 | 62.95 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 23 |
| 452 | 63.01 | temperature | 30 | 90 | < th | dose dependent | rect. | 14 | 23 |
| 535 | 63.23 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 536 | 63.24 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 11 |
| 575 | 63.36 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 584 | 63.39 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 605 | 63.45 | temperature | 25 | 270 | > th | dose independent | sin | 7 | NA |
| 609 | 63.45 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 616 | 63.48 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 14 |
| 624 | 63.51 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 641 | 63.54 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 16 |
| 649 | 63.55 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 696 | 63.71 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 723 | 63.77 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 16 |
| 726 | 63.77 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 753 | 63.84 | temperature | 25 | 270 | > th | dose independent | rect. | 23 | 12 |
| 768 | 63.87 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 2 |
| 809 | 63.96 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 832 | 64.00 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 10 |
| 890 | 64.13 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |