FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0656400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.02 (0.0808) R2 : 0.259
β1 : -3.93 (0.593) R2dD : 0.991 R2D : -0.42
β2 : 0.651 (0.109) R2dC : 0.0631 R2C : 0.00285
β3 : 1.98 (0.336) R2dE : 0.471 R2E : -0.479
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -13.7 (2.8) R2dD*E : 0.724 R2D*E : -0.947
γ1 : 0.274 (0.115) R2dN8 : 0.0154 R2N8 : -0.0143
σ : 0.83
deviance : 317.52
__
_____
C
peak time of C : 10.1
E
wheather : temperature
threshold : 28.43
memory length : 1243
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
304.3 0.82 4.01 -3.68 0.665 1.72 -2 -11.7 0.0629 10.5 27.19 1221 -- --
329.04 0.845 3.74 -1.28 0.579 0.598 -1.77 -- 0.354 10.4 -25.26 8331 -- --
317.52 0.83 4.02 -3.93 0.651 1.98 -- -13.7 0.274 10.1 28.43 1243 -- --
339.87 0.859 3.73 -1.24 0.644 0.697 -- -- 0.396 10.2 -11.98 1171 -- --
342.89 0.862 4.05 -4.04 -- 1.87 -- -13.7 0.21 -- 28.36 1307 -- --
334.88 0.858 3.7 -0.955 0.56 -- -1.79 -- 0.526 10.3 -- -- -- --
347.6 0.873 3.7 -1.03 0.578 -- -- -- 0.519 9.85 -- -- -- --
360.56 0.888 3.74 -1.16 -- 0.699 -- -- 0.426 -- -11.98 1171 -- --
374.99 0.902 3.68 -- 0.6 0.168 -- -- 0.61 10.1 -8.675 1132 -- --
367.6 0.896 3.72 -1.03 -- -- -- -- 0.519 -- -- -- -- --
375.49 0.906 3.67 -- 0.582 -- -- -- 0.634 9.98 -- -- -- --
394.14 0.928 3.7 -- -- 0.334 -- -- 0.596 -- -15.26 2346 -- --
395.85 0.929 3.69 -- -- -- -- -- 0.634 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 299.17 temperature 25 720 > th dose dependent rect. 21 1
3 301.00 temperature 25 720 > th dose dependent rect. 19 4
26 304.71 temperature 25 720 > th dose dependent rect. 18 14
29 304.91 temperature 25 4320 > th dose dependent rect. 7 3
30 304.95 wind 5 14400 > th dose dependent rect. 11 6
36 305.30 temperature 25 4320 > th dose dependent rect. 23 11
44 305.48 temperature 30 14400 > th dose independent rect. 12 1
45 305.52 temperature 30 14400 < th dose independent rect. 12 1
53 305.95 wind 5 14400 > th dose independent rect. 10 7
59 306.11 wind 5 14400 < th dose independent rect. 10 7
73 306.54 wind 7 14400 > th dose dependent rect. 14 2
74 306.58 wind 5 14400 > th dose independent rect. 11 4
80 306.63 wind 5 43200 < th dose independent rect. 13 2
86 306.74 wind 5 43200 > th dose independent rect. 13 2
99 306.95 temperature 25 720 > th dose dependent sin 12 NA
117 307.17 wind 5 4320 > th dose independent rect. 14 1
126 307.24 temperature 30 14400 < th dose independent rect. 4 10
132 307.25 temperature 30 14400 < th dose independent rect. 21 17
137 307.26 temperature 30 14400 < th dose independent rect. 6 8
141 307.27 wind 7 43200 < th dose independent rect. 14 5
143 307.27 wind 7 14400 > th dose independent rect. 5 11
183 307.42 wind 7 14400 < th dose independent rect. 5 11
189 307.43 wind 3 43200 > th dose dependent rect. 13 1
202 307.48 wind 3 14400 > th dose dependent rect. 11 1
204 307.49 temperature 30 14400 > th dose dependent rect. 12 1
216 307.53 wind 1 90 < th dose dependent rect. 4 1
219 307.55 wind 7 43200 > th dose independent rect. 14 5
249 307.63 temperature 25 1440 > th dose dependent rect. 15 17
256 307.68 wind 1 90 < th dose independent rect. 4 1
266 307.76 temperature 30 14400 < th dose independent sin 5 NA
295 307.83 wind 7 43200 < th dose independent rect. 16 3
329 307.85 temperature 25 1440 > th dose dependent rect. 15 11
337 307.88 wind 5 4320 < th dose independent rect. 14 1
352 307.93 temperature 30 14400 > th dose independent sin 5 NA
389 308.03 temperature 25 720 > th dose independent rect. 21 1
426 308.16 temperature 25 1440 > th dose dependent rect. 13 20
432 308.19 temperature 25 720 > th dose independent rect. 13 11
453 308.24 wind 7 43200 > th dose independent rect. 16 3
458 308.27 temperature 25 720 < th dose independent rect. 19 4
465 308.31 temperature 25 720 > th dose independent rect. 21 3
470 308.32 wind 7 43200 < th dose independent rect. 16 1
499 308.36 radiation 20 14400 < th dose independent rect. 3 3
522 308.45 temperature 25 1440 > th dose dependent rect. 13 13
525 308.47 humidity 80 14400 > th dose independent rect. 22 2
528 308.48 wind 9 14400 > th dose dependent rect. 13 7
557 308.61 wind 7 43200 > th dose independent rect. 16 1
583 308.65 wind 5 14400 < th dose independent rect. 11 1
606 308.72 temperature 30 14400 < th dose independent rect. 9 22
612 308.73 temperature 30 14400 < th dose independent rect. 9 15
614 308.73 temperature 30 14400 < th dose independent rect. 9 18
615 308.73 temperature 30 14400 < th dose independent rect. 9 20
648 308.75 temperature 30 14400 < th dose independent no NA NA
802 308.85 humidity 70 720 < th dose independent rect. 18 14
805 308.87 temperature 30 14400 > th dose independent no NA NA
898 308.87 temperature 25 1440 > th dose dependent rect. 15 2
917 308.93 temperature 25 720 < th dose independent rect. 21 2
956 309.03 temperature 25 14400 > th dose independent rect. 6 3