Os02g0656200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0656200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 44.08 | 0.312 | 9.32 | 0.486 | 0.277 | -1.16 | -0.114 | 0.54 | 0.449 | 21.7 | 21.47 | 334 | -- | -- |
| 44.32 | 0.31 | 9.32 | 0.402 | 0.27 | -1.13 | -0.109 | -- | 0.425 | 21.4 | 21.96 | 319 | -- | -- |
| 44.12 | 0.309 | 9.32 | 0.483 | 0.281 | -1.16 | -- | 0.537 | 0.443 | 21.7 | 21.86 | 332 | -- | -- |
| 44.31 | 0.31 | 9.33 | 0.383 | 0.272 | -1.12 | -- | -- | 0.413 | 21.7 | 21.96 | 322 | -- | -- |
| 45.87 | 0.315 | 9.31 | 0.471 | -- | -1.15 | -- | 0.415 | 0.441 | -- | 20.78 | 100 | -- | -- |
| 66.77 | 0.383 | 9.36 | 0.142 | 0.442 | -- | 0.176 | -- | 0.229 | 2.97 | -- | -- | -- | -- |
| 66.88 | 0.383 | 9.36 | 0.138 | 0.442 | -- | -- | -- | 0.228 | 2.91 | -- | -- | -- | -- |
| 45.96 | 0.316 | 9.32 | 0.394 | -- | -1.15 | -- | -- | 0.424 | -- | 20.47 | 112 | -- | -- |
| 47.78 | 0.322 | 9.34 | -- | 0.27 | -1 | -- | -- | 0.343 | 22.3 | 22.68 | 333 | -- | -- |
| 78.14 | 0.413 | 9.36 | 0.157 | -- | -- | -- | -- | 0.24 | -- | -- | -- | -- | -- |
| 67.38 | 0.384 | 9.37 | -- | 0.445 | -- | -- | -- | 0.213 | 2.92 | -- | -- | -- | -- |
| 49.79 | 0.329 | 9.33 | -- | -- | -1.06 | -- | -- | 0.367 | -- | 20.95 | 99 | -- | -- |
| 78.79 | 0.414 | 9.36 | -- | -- | -- | -- | -- | 0.222 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 43.03 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 19 |
| 3 | 43.21 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 21 |
| 5 | 43.34 | temperature | 10 | 720 | > th | dose dependent | rect. | 2 | 16 |
| 36 | 44.00 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 23 |
| 45 | 44.12 | temperature | 20 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 52 | 44.21 | temperature | 20 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 55 | 44.22 | temperature | 20 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 81 | 44.41 | temperature | 10 | 720 | > th | dose dependent | sin | 2 | NA |
| 93 | 44.48 | temperature | 20 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 103 | 44.54 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 108 | 44.56 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 138 | 44.83 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 141 | 44.84 | temperature | 20 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 176 | 45.08 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 21 |
| 206 | 45.22 | temperature | 20 | 30 | > th | dose dependent | rect. | 23 | 21 |
| 231 | 45.30 | temperature | 30 | 720 | < th | dose independent | rect. | 24 | 21 |
| 238 | 45.34 | temperature | 30 | 720 | < th | dose independent | rect. | 24 | 23 |
| 282 | 45.53 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 19 |
| 291 | 45.56 | temperature | 30 | 720 | > th | dose independent | rect. | 16 | 22 |
| 300 | 45.59 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 12 |
| 303 | 45.60 | temperature | 30 | 720 | < th | dose independent | rect. | 14 | 22 |
| 375 | 45.83 | temperature | 30 | 720 | < th | dose independent | rect. | 24 | 17 |
| 410 | 45.93 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 14 |
| 416 | 45.94 | temperature | 30 | 720 | > th | dose independent | rect. | 9 | 9 |
| 417 | 45.94 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 21 |
| 420 | 45.95 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 8 |
| 425 | 45.96 | temperature | 30 | 720 | < th | dose independent | rect. | 6 | 23 |
| 444 | 45.98 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 10 |
| 467 | 46.03 | temperature | 30 | 720 | > th | dose independent | sin | 23 | NA |
| 499 | 46.07 | temperature | 30 | 720 | > th | dose independent | no | NA | NA |
| 597 | 46.10 | temperature | 30 | 720 | < th | dose independent | rect. | 7 | 14 |
| 599 | 46.10 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 23 |
| 621 | 46.16 | temperature | 30 | 720 | < th | dose independent | no | NA | NA |
| 658 | 46.24 | temperature | 30 | 720 | < th | dose independent | rect. | 5 | 16 |
| 686 | 46.26 | temperature | 30 | 720 | < th | dose independent | rect. | 19 | 23 |
| 746 | 46.39 | temperature | 30 | 720 | > th | dose dependent | sin | 0 | NA |
| 786 | 46.44 | temperature | 30 | 720 | > th | dose dependent | rect. | 9 | 9 |
| 803 | 46.44 | temperature | 30 | 720 | > th | dose dependent | rect. | 18 | 23 |
| 824 | 46.48 | temperature | 30 | 720 | > th | dose dependent | no | NA | NA |