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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0654600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF630 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.19 (0.0392) R2 : 0.353
β1 : -0.349 (0.149) R2dD : 0.0089 R2D : -0.0117
β2 : 0.232 (0.234) R2dC : 0.00887 R2C : 0.0507
β3 : -0.677 (0.184) R2dE : 0.123 R2E : 0.18
β4 : 6.13 (0.987) R2dD*C : 0.413 R2D*C : -0.44
β5 : 5.59 (0.815) R2dD*E : 0.499 R2D*E : -0.358
γ1 : 0.536 (0.0846) R2dN8 : 0.0806 R2N8 : 0.0907
σ : 0.729
deviance : 240.77
__
_____
C
peak time of C : 13.4
E
wheather : radiation
threshold : 0.46
memory length : 112
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
240.77 0.729 5.19 -0.349 0.232 -0.677 6.13 5.59 0.536 13.4 0.46 112 -- --
267.12 0.767 5.17 0.0352 0.0479 -0.74 1.91 -- 0.587 18.8 4.03 48 -- --
264.4 0.763 5.14 0.0139 0.679 -0.305 -- 0.738 0.637 12.3 4.583 10 -- --
262.76 0.755 5.16 -0.106 0.00868 -0.882 -- -- 0.535 18.3 0.1278 73 -- --
260.53 0.752 5.19 0.0598 -- -0.812 -- 1.01 0.66 -- 0.1205 73 -- --
270.03 0.77 5.13 0.023 1.02 -- -0.486 -- 0.673 11.9 -- -- -- --
270.97 0.771 5.13 0.00475 1.03 -- -- -- 0.671 12 -- -- -- --
261.55 0.753 5.18 -0.063 -- -0.861 -- -- 0.582 -- 0.12 100 -- --
261.72 0.753 5.17 -- 0.0664 -0.871 -- -- 0.623 5.9 0.1298 75 -- --
337.25 0.858 5.15 -0.0275 -- -- -- -- 0.657 -- -- -- -- --
270.98 0.77 5.13 -- 1.03 -- -- -- 0.671 12 -- -- -- --
261.67 0.753 5.17 -- -- -0.857 -- -- 0.584 -- 0.12 100 -- --
337.27 0.857 5.15 -- -- -- -- -- 0.66 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 234.33 temperature 15.0 30 > th dose independent rect. 12 16
3 234.70 atmosphere 1010.0 30 < th dose independent rect. 12 16
5 235.58 wind 7.0 30 < th dose independent rect. 12 16
9 237.37 atmosphere 1000.0 30 > th dose independent rect. 4 8
10 237.85 temperature 20.0 30 > th dose independent rect. 4 8
11 237.93 radiation 1.0 90 < th dose dependent rect. 17 22
17 238.92 temperature 10.0 30 > th dose dependent rect. 4 8
19 239.03 radiation 1.0 90 < th dose independent rect. 17 22
20 239.10 humidity 50.0 10 > th dose independent rect. 12 16
33 239.76 wind 7.0 30 < th dose independent rect. 12 18
38 239.94 radiation 1.0 90 > th dose independent rect. 13 23
43 240.31 precipitation 0.1 10 < th dose independent rect. 12 16
45 240.31 precipitation 0.1 10 < th dose dependent rect. 12 16
51 240.53 radiation 1.0 90 > th dose independent rect. 15 21
60 241.04 wind 9.0 30 < th dose independent rect. 4 8
63 241.32 precipitation 0.1 30 < th dose independent rect. 4 8
64 241.32 precipitation 0.1 30 < th dose dependent rect. 4 8
69 241.38 atmosphere 1015.0 30 < th dose independent rect. 4 8
75 241.51 humidity 50.0 30 > th dose independent rect. 4 8
78 241.54 temperature 10.0 10 > th dose dependent rect. 6 6
81 241.60 atmosphere 995.0 30 > th dose independent rect. 12 16
103 242.31 radiation 1.0 90 < th dose dependent rect. 5 23
113 242.47 radiation 1.0 90 < th dose dependent rect. 12 22
136 242.93 radiation 1.0 90 < th dose dependent no NA NA
138 242.95 radiation 1.0 90 < th dose dependent rect. 9 23
140 243.03 temperature 15.0 270 > th dose independent rect. 17 11
148 243.15 wind 7.0 10 < th dose independent rect. 12 11
151 243.16 humidity 90.0 10 < th dose independent rect. 4 8
155 243.27 wind 9.0 30 < th dose dependent rect. 12 16
162 243.46 radiation 1.0 90 > th dose independent sin 8 NA
166 243.55 radiation 1.0 30 > th dose independent rect. 5 7
178 243.57 atmosphere 1000.0 30 > th dose independent rect. 4 21
182 243.65 radiation 1.0 90 < th dose independent rect. 5 23
226 244.04 radiation 1.0 90 < th dose dependent rect. 17 17
228 244.05 temperature 30.0 90 < th dose independent rect. 4 8
230 244.07 wind 7.0 270 < th dose independent rect. 10 17
245 244.33 temperature 10.0 1440 > th dose independent rect. 5 8
248 244.33 atmosphere 995.0 1440 > th dose independent rect. 5 8
249 244.33 temperature 10.0 1440 > th dose independent rect. 13 16
258 244.48 wind 7.0 270 < th dose independent rect. 9 11
262 244.62 wind 9.0 30 < th dose dependent rect. 4 8
263 244.63 atmosphere 995.0 30 > th dose dependent rect. 4 8
267 244.66 atmosphere 1000.0 10 > th dose independent rect. 12 18
279 244.77 radiation 1.0 90 < th dose independent rect. 12 22
297 245.03 wind 9.0 10 < th dose independent rect. 6 6
302 245.11 temperature 10.0 10 > th dose dependent rect. 23 13
306 245.15 radiation 1.0 90 > th dose independent rect. 4 14
316 245.16 temperature 10.0 270 > th dose dependent rect. 3 6
319 245.17 radiation 1.0 90 < th dose independent rect. 17 17
324 245.20 radiation 1.0 90 < th dose independent no NA NA
328 245.20 radiation 1.0 90 < th dose dependent rect. 23 23
329 245.22 radiation 1.0 90 < th dose independent rect. 9 23
331 245.25 radiation 1.0 90 > th dose independent no NA NA
377 245.25 atmosphere 1015.0 30 < th dose dependent rect. 12 16
380 245.31 atmosphere 1000.0 270 > th dose independent rect. 4 13
397 245.47 temperature 30.0 270 < th dose dependent rect. 23 3
413 245.54 temperature 15.0 720 > th dose independent rect. 16 5
433 245.71 atmosphere 1000.0 30 > th dose independent rect. 5 15
435 245.71 temperature 30.0 90 < th dose dependent rect. 1 3
450 245.86 temperature 10.0 10 > th dose independent rect. 6 6
453 245.86 atmosphere 1015.0 10 < th dose independent rect. 6 6
461 245.93 radiation 1.0 90 < th dose independent sin 9 NA
485 246.11 radiation 1.0 90 < th dose dependent rect. 1 22
493 246.15 radiation 1.0 90 < th dose dependent sin 9 NA
528 246.39 wind 1.0 90 > th dose independent rect. 15 10
550 246.48 atmosphere 995.0 90 > th dose independent rect. 1 14
551 246.49 temperature 10.0 1440 > th dose independent rect. 7 6
554 246.49 atmosphere 995.0 1440 > th dose independent rect. 7 6
555 246.49 temperature 10.0 1440 > th dose independent rect. 13 18
558 246.50 temperature 30.0 30 < th dose independent rect. 12 16
574 246.61 wind 1.0 90 > th dose independent rect. 12 16
582 246.66 wind 9.0 720 < th dose independent rect. 23 15
603 246.82 radiation 40.0 90 < th dose independent rect. 15 10
609 246.84 precipitation 0.1 90 < th dose independent rect. 1 14
611 246.84 precipitation 0.1 90 < th dose dependent rect. 1 14
624 246.94 temperature 15.0 270 > th dose independent rect. 23 3
645 247.03 wind 1.0 10 > th dose independent rect. 6 6
648 247.07 temperature 15.0 720 > th dose independent rect. 17 2
650 247.08 temperature 30.0 30 < th dose independent rect. 12 18
665 247.20 temperature 30.0 720 < th dose independent rect. 2 9
673 247.24 temperature 10.0 90 > th dose independent rect. 15 10
674 247.24 wind 7.0 270 < th dose independent rect. 16 12
675 247.24 temperature 10.0 90 > th dose independent rect. 1 14
676 247.24 atmosphere 1015.0 90 < th dose independent rect. 1 14
680 247.26 precipitation 0.1 30 < th dose independent rect. 1 3
681 247.26 radiation 40.0 90 < th dose independent rect. 12 16
683 247.26 precipitation 0.1 30 < th dose dependent rect. 1 3
695 247.36 temperature 15.0 10 > th dose independent rect. 18 12
701 247.38 temperature 15.0 270 > th dose independent rect. 22 5
703 247.40 atmosphere 1000.0 10 > th dose independent rect. 12 11
710 247.43 wind 9.0 90 < th dose independent rect. 1 14
719 247.49 wind 1.0 720 > th dose independent rect. 16 7
723 247.51 radiation 1.0 90 < th dose independent rect. 23 23
729 247.54 temperature 25.0 30 < th dose independent rect. 24 4
746 247.63 wind 9.0 30 < th dose dependent rect. 12 11
756 247.74 radiation 1.0 90 > th dose independent rect. 17 23
757 247.75 temperature 10.0 30 > th dose dependent rect. 12 16
778 247.78 temperature 15.0 1440 > th dose independent rect. 16 9
788 247.84 atmosphere 995.0 30 > th dose dependent rect. 1 3
804 247.91 temperature 30.0 10 < th dose independent rect. 6 6
805 247.91 humidity 50.0 90 > th dose independent rect. 1 14
829 247.98 atmosphere 1010.0 270 < th dose independent rect. 23 3
847 248.08 radiation 1.0 90 < th dose independent rect. 1 22
848 248.10 atmosphere 1010.0 720 < th dose independent rect. 16 3
855 248.15 wind 9.0 720 < th dose independent rect. 1 12
859 248.17 atmosphere 1010.0 30 < th dose independent rect. 20 8
885 248.27 radiation 40.0 4320 < th dose dependent rect. 21 8
895 248.33 precipitation 0.1 10 < th dose independent rect. 23 13
897 248.33 precipitation 0.1 10 < th dose dependent rect. 23 13
903 248.36 radiation 40.0 90 < th dose dependent rect. 12 16
906 248.38 wind 9.0 30 < th dose independent rect. 1 3
907 248.38 temperature 10.0 30 > th dose independent rect. 1 3
910 248.38 humidity 50.0 30 > th dose independent rect. 1 3
913 248.38 atmosphere 995.0 30 > th dose independent rect. 1 3
914 248.38 atmosphere 1010.0 30 < th dose independent rect. 1 3
916 248.38 radiation 1.0 30 < th dose independent rect. 1 3
928 248.38 temperature 10.0 30 > th dose independent rect. 4 21
929 248.38 radiation 1.0 30 < th dose dependent rect. 1 3
950 248.45 wind 9.0 720 < th dose independent rect. 2 9
963 248.46 humidity 50.0 30 > th dose dependent rect. 1 3
977 248.50 atmosphere 1015.0 1440 < th dose independent rect. 24 5
993 248.52 wind 9.0 10 < th dose independent rect. 23 13
1000 248.55 humidity 70.0 4320 > th dose independent rect. 21 8