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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0654300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Protein kinase KIPK.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.76 (0.0545) R2 : 0.367
β1 : -1.03 (0.208) R2dD : 0.0399 R2D : -0.00754
β2 : 1.09 (0.139) R2dC : 0.0847 R2C : 0.0859
β3 : -1.56 (0.158) R2dE : 0.171 R2E : 0.166
β4 : 3.14 (0.625) R2dD*C : 0.0352 R2D*C : 0.0217
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.463 (0.123) R2dN8 : 0.0297 R2N8 : 0.0742
σ : 0.999
deviance : 459.7
__
_____
C
peak time of C : 6.9
E
wheather : atmosphere
threshold : 1011
memory length : 8844
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
458.17 1.01 5.79 -1.26 1.08 -1.51 3.18 0.745 0.405 6.89 1011 8895 -- --
459.7 0.999 5.76 -1.03 1.09 -1.56 3.14 -- 0.463 6.9 1011 8844 -- --
484.04 1.02 5.8 -1.18 1.08 -1.51 -- 0.675 0.392 6.99 1011 8949 -- --
485.02 1.03 5.76 -0.973 1.09 -1.56 -- -- 0.453 7.04 1011 8850 -- --
543.79 1.09 5.82 -1.16 -- -1.63 -- 0.788 0.398 -- 1010 9826 -- --
559.3 1.11 5.66 -0.338 1.1 -- 3.19 -- 0.918 6.76 -- -- -- --
585.12 1.13 5.66 -0.284 1.11 -- -- -- 0.911 6.93 -- -- -- --
545.08 1.09 5.81 -0.899 -- -1.68 -- -- 0.404 -- 1010 9813 -- --
504.15 1.05 5.74 -- 1.07 -1.39 -- -- 0.567 7.03 1010 9874 -- --
650.26 1.19 5.69 -0.26 -- -- -- -- 0.931 -- -- -- -- --
587.24 1.13 5.65 -- 1.11 -- -- -- 0.942 6.94 -- -- -- --
563.24 1.11 5.76 -- -- -1.43 -- -- 0.586 -- 1010 9855 -- --
652.05 1.19 5.68 -- -- -- -- -- 0.96 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 457.44 precipitation 0.1 14400 < th dose independent rect. 5 2
2 457.44 precipitation 0.1 14400 < th dose dependent rect. 5 2
3 459.09 precipitation 0.1 14400 > th dose dependent rect. 5 2
4 459.19 precipitation 0.1 14400 > th dose independent rect. 5 2
5 459.22 precipitation 0.1 14400 < th dose independent rect. 3 5
6 459.22 precipitation 0.1 14400 < th dose dependent rect. 3 5
7 459.73 precipitation 0.1 14400 > th dose independent rect. 3 5
8 460.05 precipitation 0.1 14400 > th dose dependent rect. 3 5
26 462.44 radiation 20.0 14400 < th dose independent rect. 16 15
30 463.54 radiation 30.0 14400 < th dose independent rect. 15 17
31 463.60 radiation 10.0 4320 < th dose dependent rect. 18 11
36 464.65 radiation 20.0 14400 > th dose dependent rect. 16 15
41 465.66 radiation 1.0 14400 > th dose dependent rect. 18 1
52 465.90 humidity 70.0 14400 > th dose independent rect. 19 8
53 465.91 humidity 70.0 14400 > th dose independent rect. 19 3
75 467.11 radiation 20.0 14400 < th dose independent rect. 5 1
76 467.14 radiation 1.0 14400 > th dose dependent rect. 17 13
77 467.51 temperature 15.0 14400 < th dose dependent rect. 3 1
78 467.53 radiation 30.0 14400 < th dose independent rect. 15 5
79 467.54 radiation 30.0 14400 < th dose independent rect. 15 7
80 467.54 radiation 30.0 14400 < th dose independent rect. 16 11
102 467.78 temperature 15.0 14400 < th dose dependent rect. 2 3
103 467.79 humidity 80.0 43200 > th dose independent rect. 13 1
110 467.93 radiation 30.0 14400 > th dose dependent rect. 15 17
115 468.15 radiation 20.0 4320 < th dose dependent rect. 18 2
118 468.23 humidity 80.0 43200 < th dose independent rect. 13 1
125 468.32 radiation 40.0 14400 > th dose dependent rect. 14 19
134 468.60 radiation 10.0 4320 < th dose dependent rect. 18 9
164 469.21 wind 5.0 43200 > th dose dependent rect. 13 1
173 469.29 radiation 1.0 14400 > th dose dependent rect. 4 2
202 469.52 radiation 1.0 1440 < th dose dependent rect. 18 23
214 469.72 radiation 10.0 14400 < th dose independent sin 14 NA
228 469.85 humidity 90.0 43200 < th dose independent rect. 19 1
229 469.85 humidity 70.0 14400 < th dose independent rect. 18 4
241 469.91 radiation 20.0 14400 < th dose dependent rect. 1 5
246 469.99 radiation 20.0 14400 < th dose dependent rect. 4 2
256 470.06 radiation 20.0 14400 < th dose dependent rect. 21 9
258 470.07 radiation 30.0 14400 < th dose dependent rect. 17 14
275 470.22 radiation 30.0 14400 < th dose independent sin 12 NA
336 470.45 radiation 40.0 14400 > th dose dependent rect. 8 1
366 470.64 radiation 10.0 14400 < th dose independent rect. 14 5
380 470.67 humidity 60.0 43200 > th dose independent rect. 17 1
393 470.81 radiation 30.0 14400 > th dose dependent rect. 15 1
394 470.83 radiation 10.0 43200 > th dose independent rect. 5 1
435 470.90 humidity 60.0 43200 < th dose independent rect. 14 4
453 471.08 humidity 60.0 43200 > th dose independent rect. 14 4
458 471.15 radiation 1.0 14400 < th dose dependent rect. 9 1
463 471.20 wind 7.0 43200 > th dose independent rect. 14 1
465 471.22 wind 5.0 43200 < th dose independent rect. 11 2
474 471.30 wind 7.0 43200 < th dose independent rect. 14 1
477 471.34 humidity 60.0 43200 < th dose independent rect. 14 2
495 471.39 wind 5.0 43200 > th dose independent rect. 11 2
510 471.56 atmosphere 1005.0 43200 > th dose independent rect. 2 1
511 471.58 atmosphere 1010.0 4320 > th dose independent rect. 2 1
514 471.61 atmosphere 1010.0 4320 > th dose independent rect. 2 3
524 471.69 atmosphere 1010.0 4320 > th dose dependent rect. 2 2
529 471.75 radiation 1.0 1440 < th dose dependent rect. 11 20
542 471.86 atmosphere 1010.0 4320 < th dose independent rect. 2 3
582 472.00 atmosphere 1010.0 4320 < th dose independent rect. 2 1
625 472.18 atmosphere 1005.0 43200 < th dose independent rect. 2 1
649 472.41 humidity 90.0 14400 > th dose independent rect. 1 3
668 472.57 radiation 20.0 14400 < th dose independent rect. 2 6
681 472.60 radiation 20.0 14400 < th dose independent rect. 21 11
697 472.66 radiation 1.0 1440 < th dose dependent rect. 5 22
725 472.79 radiation 1.0 1440 < th dose dependent rect. 5 14
728 472.80 radiation 1.0 1440 < th dose dependent rect. 5 20
738 472.86 atmosphere 1010.0 4320 > th dose dependent rect. 24 9
885 473.50 radiation 1.0 43200 < th dose independent rect. 9 1
886 473.51 humidity 90.0 14400 > th dose dependent rect. 1 1
889 473.53 radiation 1.0 1440 < th dose dependent rect. 24 19
901 473.57 radiation 40.0 14400 < th dose dependent rect. 16 16
902 473.58 radiation 1.0 43200 > th dose independent rect. 9 1
907 473.59 atmosphere 1010.0 4320 > th dose dependent rect. 5 1
911 473.59 radiation 1.0 1440 < th dose dependent rect. 2 17
912 473.59 radiation 1.0 1440 < th dose dependent rect. 2 23
921 473.61 radiation 1.0 1440 < th dose dependent rect. 15 23
938 473.65 radiation 1.0 1440 < th dose dependent no NA NA
967 473.74 radiation 40.0 14400 > th dose dependent sin 13 NA