Os02g0653900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Avr9/Cf-9 rapidly elicited protein 14 (Fragment).
FiT-DB / Search/ Help/ Sample detail
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Os02g0653900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Avr9/Cf-9 rapidly elicited protein 14 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 53.34 | 0.343 | 12.5 | 0.47 | 0.876 | -2.1 | 0.0992 | -3.49 | 0.337 | 7.91 | 0.7234 | 1450 | -- | -- |
| 58.64 | 0.357 | 12.5 | 0.309 | 0.829 | -1.28 | 0.193 | -- | 0.352 | 7.61 | 1.83 | 1474 | -- | -- |
| 53.37 | 0.34 | 12.5 | 0.471 | 0.871 | -2.12 | -- | -3.54 | 0.333 | 7.88 | 0.7101 | 1452 | -- | -- |
| 58.17 | 0.355 | 12.5 | 0.186 | 0.86 | -1.35 | -- | -- | 0.312 | 7.67 | 1.554 | 1467 | -- | -- |
| 89.71 | 0.441 | 12.5 | 0.442 | -- | -2.31 | -- | -3.49 | 0.361 | -- | 0.74 | 1487 | -- | -- |
| 77.66 | 0.413 | 12.5 | 0.452 | 0.918 | -- | 0.111 | -- | 0.459 | 8.01 | -- | -- | -- | -- |
| 77.7 | 0.413 | 12.5 | 0.456 | 0.918 | -- | -- | -- | 0.459 | 8.01 | -- | -- | -- | -- |
| 94.35 | 0.452 | 12.5 | 0.128 | -- | -1.64 | -- | -- | 0.305 | -- | 1.527 | 1500 | -- | -- |
| 58.81 | 0.357 | 12.5 | -- | 0.815 | -1.47 | -- | -- | 0.31 | 7.43 | 1.55 | 1480 | -- | -- |
| 123.72 | 0.52 | 12.5 | 0.464 | -- | -- | -- | -- | 0.47 | -- | -- | -- | -- | -- |
| 83.17 | 0.427 | 12.5 | -- | 0.92 | -- | -- | -- | 0.408 | 7.98 | -- | -- | -- | -- |
| 94.75 | 0.453 | 12.6 | -- | -- | -1.72 | -- | -- | 0.252 | -- | 1.55 | 1500 | -- | -- |
| 129.41 | 0.531 | 12.5 | -- | -- | -- | -- | -- | 0.419 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 51.36 | wind | 7.0 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 3 | 51.71 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 6 | 52.08 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 10 | 52.69 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 18 | 14 |
| 11 | 52.69 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 5 | 11 |
| 15 | 52.79 | wind | 5.0 | 43200 | < th | dose independent | rect. | 5 | 12 |
| 19 | 52.82 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 9 | 7 |
| 21 | 52.85 | wind | 5.0 | 43200 | > th | dose independent | rect. | 9 | 7 |
| 26 | 52.91 | wind | 5.0 | 43200 | < th | dose independent | rect. | 8 | 8 |
| 27 | 52.91 | wind | 5.0 | 43200 | > th | dose independent | rect. | 5 | 12 |
| 36 | 53.02 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 40 | 53.03 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 52 | 53.10 | wind | 3.0 | 43200 | > th | dose dependent | sin | 2 | NA |
| 54 | 53.12 | wind | 5.0 | 43200 | < th | dose independent | sin | 1 | NA |
| 55 | 53.12 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 18 | 4 |
| 66 | 53.13 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 24 | 17 |
| 72 | 53.17 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 18 | 10 |
| 86 | 53.23 | wind | 5.0 | 43200 | > th | dose independent | sin | 1 | NA |
| 89 | 53.24 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 107 | 53.31 | wind | 7.0 | 43200 | > th | dose independent | rect. | 24 | 16 |
| 128 | 53.39 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 190 | 53.55 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 9 | 12 |
| 192 | 53.56 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 206 | 53.60 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 230 | 53.66 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 240 | 53.69 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 241 | 53.69 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 251 | 53.70 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 21 |
| 267 | 53.73 | wind | 5.0 | 43200 | < th | dose independent | rect. | 11 | 2 |
| 275 | 53.75 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 24 | 19 |
| 282 | 53.76 | wind | 7.0 | 43200 | < th | dose independent | rect. | 5 | 16 |
| 289 | 53.77 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 292 | 53.77 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 2 | 17 |
| 298 | 53.78 | wind | 5.0 | 43200 | > th | dose independent | rect. | 5 | 17 |
| 319 | 53.80 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 5 | 14 |
| 330 | 53.81 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 5 | 23 |
| 332 | 53.82 | wind | 7.0 | 43200 | < th | dose independent | rect. | 7 | 14 |
| 335 | 53.82 | radiation | 1.0 | 1440 | < th | dose dependent | no | NA | NA |
| 345 | 53.83 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 348 | 53.83 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 17 | 7 |
| 355 | 53.83 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 2 | 23 |
| 385 | 53.86 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 5 | 20 |
| 391 | 53.87 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 10 |
| 416 | 53.89 | wind | 7.0 | 43200 | < th | dose independent | rect. | 24 | 21 |
| 422 | 53.90 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 443 | 53.90 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 5 | 16 |
| 454 | 53.91 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 20 | 21 |
| 462 | 53.92 | wind | 7.0 | 43200 | > th | dose independent | rect. | 24 | 21 |
| 485 | 53.95 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 3 | 12 |
| 499 | 53.97 | wind | 5.0 | 43200 | > th | dose independent | rect. | 11 | 2 |
| 597 | 54.07 | radiation | 1.0 | 1440 | < th | dose dependent | sin | 1 | NA |
| 624 | 54.10 | wind | 7.0 | 43200 | > th | dose independent | rect. | 20 | 21 |
| 688 | 54.18 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 694 | 54.18 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 19 | 1 |
| 701 | 54.19 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 18 | 14 |
| 721 | 54.21 | wind | 7.0 | 43200 | < th | dose independent | rect. | 20 | 21 |
| 749 | 54.24 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 760 | 54.24 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 10 | 20 |
| 792 | 54.27 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 797 | 54.27 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 7 | 23 |
| 839 | 54.32 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 17 | 14 |
| 853 | 54.33 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 913 | 54.37 | wind | 7.0 | 43200 | < th | dose independent | rect. | 9 | 21 |
| 915 | 54.37 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 1 | 4 |
| 916 | 54.37 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 17 | 5 |
| 973 | 54.40 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 24 | 15 |
| 984 | 54.41 | wind | 7.0 | 43200 | > th | dose independent | rect. | 9 | 21 |