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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0653300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.35 (0.0386) R2 : 0.453
β1 : 0.744 (0.142) R2dD : 0.0347 R2D : 0.00858
β2 : 2.05 (0.108) R2dC : 0.547 R2C : 0.319
β3 : -1.01 (0.125) R2dE : 0.1 R2E : -0.13
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.307 (0.083) R2dN8 : 0.0224 R2N8 : -0.00458
σ : 0.721
deviance : 239.35
__
_____
C
peak time of C : 15
E
wheather : radiation
threshold : 0.005638
memory length : 311
response mode : > th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 6.25
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
238.37 0.725 4.34 0.789 2.03 -0.993 0.0703 0.671 0.319 15 1.935e-06 310 6.17 --
239.04 0.72 4.35 0.757 2.03 -0.995 0.326 -- 0.307 15 3.25e-06 310 6.22 --
238.31 0.719 4.35 0.801 2.04 -1.03 -- 0.78 0.323 15.1 0.001108 310 6.29 --
239.35 0.721 4.35 0.744 2.05 -1.01 -- -- 0.307 15 0.005638 311 6.25 --
273.16 0.77 4.36 0.635 -- -1.65 -- -0.0862 0.221 -- -0.09081 537 7.25 --
273.15 0.775 4.37 0.635 1.65 -- 0.101 -- 0.219 15.2 -- -- -- --
273.19 0.774 4.37 0.637 1.65 -- -- -- 0.22 15.2 -- -- -- --
273.19 0.77 4.36 0.637 -- -1.65 -- -- 0.22 -- -0.4732 541 7.28 --
254.02 0.742 4.34 -- 2 -0.957 -- -- 0.273 15 0.01981 314 6.14 --
428.32 0.967 4.37 0.567 -- -- -- -- 0.177 -- -- -- -- --
283.89 0.788 4.39 -- 1.64 -- -- -- 0.149 15.2 -- -- -- --
283.89 0.785 4.38 -- -- -1.64 -- -- 0.149 -- -2.539 565 7.48 --
436.8 0.976 4.39 -- -- -- -- -- 0.114 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 229.71 radiation 40.0 270 < th dose independent rect. 14 8
2 231.14 temperature 15.0 270 > th dose independent rect. 15 6
3 231.36 temperature 15.0 270 > th dose independent rect. 14 8
5 231.70 precipitation 0.1 270 < th dose independent rect. 21 18
6 231.70 precipitation 0.1 270 < th dose dependent rect. 21 18
9 231.94 wind 9.0 270 < th dose independent rect. 21 18
10 231.95 precipitation 0.1 270 < th dose independent rect. 15 6
11 231.95 precipitation 0.1 270 < th dose dependent rect. 15 6
13 231.97 temperature 10.0 270 > th dose independent rect. 21 18
14 231.98 humidity 50.0 270 > th dose independent rect. 21 18
16 232.09 temperature 10.0 270 > th dose independent rect. 22 16
17 232.09 atmosphere 995.0 270 > th dose independent rect. 22 16
18 232.09 precipitation 0.1 270 < th dose independent rect. 22 16
19 232.09 precipitation 0.1 270 < th dose dependent rect. 22 16
20 232.12 wind 9.0 270 < th dose independent rect. 22 16
22 232.40 wind 9.0 270 < th dose independent rect. 9 6
23 232.41 humidity 50.0 270 > th dose independent rect. 9 6
24 232.41 precipitation 0.1 270 < th dose independent rect. 9 6
25 232.41 precipitation 0.1 270 < th dose dependent rect. 9 6
26 232.44 wind 1.0 270 > th dose independent rect. 15 6
27 232.46 temperature 10.0 270 > th dose independent rect. 9 6
28 232.46 atmosphere 1015.0 270 < th dose independent rect. 9 6
29 232.46 temperature 10.0 270 > th dose independent rect. 15 18
31 232.58 wind 9.0 270 < th dose independent rect. 15 6
33 232.62 humidity 60.0 270 > th dose independent rect. 2 8
34 232.73 atmosphere 995.0 270 > th dose independent rect. 15 6
35 232.73 atmosphere 1015.0 270 < th dose independent rect. 22 16
36 232.84 atmosphere 995.0 270 > th dose independent rect. 21 18
37 232.85 precipitation 0.1 270 < th dose independent rect. 14 8
38 232.85 precipitation 0.1 270 < th dose dependent rect. 14 8
39 232.91 wind 1.0 270 > th dose independent rect. 14 8
40 233.02 atmosphere 1015.0 270 < th dose independent rect. 21 18
41 233.11 wind 9.0 270 < th dose independent rect. 15 18
42 233.15 wind 9.0 270 < th dose independent rect. 14 8
43 233.20 atmosphere 995.0 270 > th dose independent rect. 15 18
45 233.25 wind 9.0 270 < th dose independent rect. 10 16
49 233.41 radiation 40.0 90 < th dose dependent rect. 15 8
50 233.47 temperature 10.0 270 > th dose independent rect. 2 8
51 233.47 atmosphere 995.0 270 > th dose independent rect. 2 8
52 233.47 atmosphere 1015.0 270 < th dose independent rect. 2 8
53 233.47 temperature 10.0 270 > th dose independent rect. 10 16
54 233.48 atmosphere 995.0 270 > th dose independent rect. 9 6
55 233.53 wind 1.0 270 > th dose independent rect. 9 6
57 233.53 wind 9.0 270 < th dose independent rect. 2 8
59 233.54 precipitation 0.1 270 < th dose independent rect. 15 18
60 233.54 precipitation 0.1 270 < th dose dependent rect. 15 18
64 233.66 atmosphere 1015.0 270 < th dose independent rect. 15 6
65 233.66 precipitation 0.1 270 < th dose independent rect. 20 8
66 233.66 precipitation 0.1 270 < th dose dependent rect. 20 8
67 233.70 humidity 50.0 270 > th dose independent rect. 22 16
68 233.70 precipitation 0.1 270 < th dose independent rect. 4 16
69 233.70 precipitation 0.1 270 < th dose dependent rect. 4 16
70 233.73 wind 7.0 270 < th dose independent rect. 20 8
71 233.75 precipitation 0.1 270 < th dose independent rect. 2 8
72 233.75 precipitation 0.1 270 < th dose dependent rect. 2 8
77 233.96 temperature 10.0 270 > th dose independent rect. 20 8
78 233.96 temperature 30.0 270 < th dose independent rect. 20 8
79 233.96 humidity 50.0 270 > th dose independent rect. 20 8
82 233.96 atmosphere 995.0 270 > th dose independent rect. 20 8
83 233.96 radiation 1.0 270 < th dose independent rect. 20 8
88 233.96 temperature 10.0 270 > th dose independent rect. 4 16
89 233.96 atmosphere 1015.0 270 < th dose independent rect. 4 16
90 233.96 radiation 1.0 270 < th dose dependent rect. 20 8
96 234.19 radiation 1.0 270 > th dose independent rect. 9 6
98 234.23 atmosphere 995.0 270 > th dose independent rect. 14 8
101 234.36 radiation 40.0 270 < th dose independent rect. 15 18
106 234.69 precipitation 0.1 270 < th dose independent rect. 21 6
109 234.69 precipitation 0.1 270 < th dose dependent rect. 21 6
111 234.71 wind 7.0 270 < th dose independent rect. 21 6
119 234.80 precipitation 0.1 270 < th dose independent rect. 10 16
120 234.80 precipitation 0.1 270 < th dose dependent rect. 10 16
136 235.07 temperature 10.0 270 > th dose independent rect. 21 6
137 235.07 temperature 30.0 270 < th dose independent rect. 21 6
138 235.07 humidity 50.0 270 > th dose independent rect. 21 6
141 235.07 atmosphere 995.0 270 > th dose independent rect. 21 6
142 235.07 radiation 1.0 270 < th dose independent rect. 21 6
148 235.07 temperature 10.0 270 > th dose independent rect. 3 18
149 235.07 radiation 1.0 270 < th dose dependent rect. 21 6
156 235.11 radiation 40.0 270 < th dose independent rect. 16 16
157 235.11 precipitation 0.1 270 < th dose independent rect. 3 18
158 235.11 precipitation 0.1 270 < th dose dependent rect. 3 18
163 235.13 atmosphere 995.0 270 > th dose independent rect. 4 16
172 235.28 wind 9.0 270 < th dose independent rect. 4 16
189 235.61 atmosphere 995.0 270 > th dose dependent rect. 15 6
192 235.64 precipitation 0.1 270 < th dose independent rect. 16 16
193 235.64 precipitation 0.1 270 < th dose dependent rect. 16 16
196 235.73 wind 9.0 270 < th dose dependent rect. 20 7
213 236.12 atmosphere 995.0 270 > th dose independent rect. 3 18
214 236.15 temperature 10.0 270 > th dose dependent rect. 9 6
218 236.24 wind 9.0 270 < th dose independent rect. 3 18
244 236.47 humidity 50.0 270 > th dose dependent rect. 20 7
256 236.58 humidity 50.0 270 > th dose dependent rect. 3 7
273 236.81 temperature 10.0 1440 > th dose independent rect. 4 9
276 236.81 atmosphere 995.0 1440 > th dose independent rect. 4 9
277 236.81 temperature 10.0 1440 > th dose independent rect. 13 15
295 237.02 atmosphere 1015.0 270 < th dose independent rect. 21 6
298 237.05 humidity 90.0 270 < th dose independent rect. 9 6
325 237.35 temperature 10.0 270 > th dose dependent rect. 3 6
328 237.36 temperature 10.0 90 > th dose dependent rect. 3 8
381 237.82 temperature 30.0 270 < th dose independent rect. 3 6
395 238.05 humidity 50.0 90 > th dose independent rect. 16 7
396 238.05 humidity 60.0 10 > th dose dependent rect. 23 5
402 238.12 temperature 30.0 270 < th dose independent rect. 2 8
404 238.21 wind 9.0 10 < th dose dependent rect. 23 5
412 238.41 atmosphere 1015.0 270 < th dose independent rect. 20 8
424 238.53 humidity 50.0 270 > th dose independent rect. 16 16
453 238.75 radiation 40.0 270 < th dose dependent rect. 15 17
456 238.77 wind 9.0 1440 < th dose independent rect. 3 1
457 238.77 temperature 10.0 1440 > th dose independent rect. 3 1
460 238.77 temperature 30.0 1440 < th dose independent rect. 3 1
464 238.77 humidity 50.0 1440 > th dose independent rect. 3 1
473 238.77 atmosphere 995.0 1440 > th dose independent rect. 3 1
474 238.77 radiation 1.0 1440 < th dose independent rect. 3 1
496 238.77 temperature 10.0 1440 > th dose independent rect. 4 23
499 238.77 radiation 1.0 1440 < th dose dependent rect. 3 1
543 238.89 radiation 40.0 270 < th dose independent rect. 3 6
547 238.90 atmosphere 995.0 10 > th dose independent rect. 16 7
550 238.91 atmosphere 995.0 10 > th dose independent rect. 4 19
551 238.91 radiation 40.0 43200 < th dose dependent rect. 3 1
567 239.00 atmosphere 1015.0 10 < th dose independent rect. 23 17
568 239.01 humidity 50.0 10 > th dose independent rect. 4 8
579 239.09 wind 9.0 10 < th dose independent rect. 4 8
602 239.16 wind 9.0 10 < th dose independent rect. 12 16
603 239.16 atmosphere 995.0 10 > th dose dependent rect. 16 7
607 239.19 atmosphere 995.0 270 > th dose dependent rect. 9 6
612 239.22 precipitation 0.1 10 < th dose independent rect. 12 16
615 239.22 precipitation 0.1 10 < th dose dependent rect. 12 16
616 239.23 atmosphere 1015.0 10 < th dose independent rect. 23 5
637 239.43 wind 1.0 270 > th dose independent rect. 11 2
640 239.47 temperature 10.0 270 > th dose dependent rect. 21 6
642 239.48 atmosphere 1015.0 270 < th dose independent rect. 10 16
664 239.62 temperature 10.0 10 > th dose dependent rect. 23 5
667 239.63 temperature 10.0 270 > th dose independent rect. 11 2
668 239.63 atmosphere 995.0 270 > th dose independent rect. 11 2
669 239.63 atmosphere 1015.0 270 < th dose independent rect. 11 2
670 239.63 precipitation 0.1 270 < th dose independent rect. 11 2
672 239.63 temperature 10.0 270 > th dose independent rect. 13 22
673 239.63 precipitation 0.1 270 < th dose dependent rect. 11 2
675 239.65 precipitation 0.1 10 < th dose independent rect. 23 5
676 239.65 precipitation 0.1 10 < th dose dependent rect. 23 5
682 239.69 wind 9.0 270 < th dose independent rect. 11 2
690 239.71 wind 1.0 270 > th dose independent rect. 21 18
704 239.87 wind 7.0 10 < th dose independent rect. 23 5
706 239.88 temperature 10.0 10 > th dose independent rect. 23 5
707 239.88 temperature 30.0 10 < th dose independent rect. 23 5
708 239.88 humidity 50.0 10 > th dose independent rect. 23 5
711 239.88 atmosphere 995.0 10 > th dose independent rect. 23 5
712 239.88 radiation 1.0 10 < th dose independent rect. 23 5
718 239.88 temperature 10.0 10 > th dose independent rect. 4 19
720 239.88 atmosphere 1015.0 10 < th dose independent rect. 4 19
721 239.88 radiation 1.0 10 < th dose dependent rect. 23 5
728 239.92 atmosphere 995.0 270 > th dose dependent rect. 11 2
729 239.94 temperature 10.0 10 > th dose independent rect. 4 8
731 239.94 atmosphere 995.0 10 > th dose independent rect. 4 8
732 239.94 atmosphere 1015.0 10 < th dose independent rect. 4 8
733 239.94 temperature 10.0 10 > th dose independent rect. 12 16
741 240.00 temperature 10.0 10 > th dose independent rect. 16 7
743 240.00 atmosphere 1010.0 10 < th dose independent rect. 16 7
745 240.00 radiation 30.0 10 < th dose independent rect. 16 7
748 240.00 temperature 10.0 10 > th dose independent rect. 23 17
764 240.07 wind 1.0 10 > th dose independent rect. 16 7
765 240.07 wind 9.0 270 < th dose dependent rect. 23 1
772 240.12 wind 9.0 270 < th dose dependent rect. 3 7
791 240.20 precipitation 0.1 10 < th dose independent rect. 4 8
794 240.20 precipitation 0.1 10 < th dose dependent rect. 4 8
796 240.23 humidity 50.0 270 > th dose independent rect. 11 2
800 240.25 wind 9.0 10 < th dose independent rect. 16 7
802 240.25 precipitation 0.1 10 < th dose independent rect. 4 19
803 240.25 precipitation 0.1 10 < th dose dependent rect. 4 19
808 240.27 wind 9.0 10 < th dose independent rect. 4 19
835 240.33 temperature 10.0 270 > th dose dependent rect. 23 1
859 240.47 precipitation 0.1 10 < th dose independent rect. 16 7
861 240.47 precipitation 0.1 10 < th dose dependent rect. 16 7
863 240.50 radiation 1.0 270 > th dose independent rect. 11 2
875 240.57 wind 1.0 270 > th dose independent rect. 21 6
881 240.63 wind 9.0 10 < th dose independent rect. 23 17
885 240.67 temperature 10.0 270 > th dose dependent rect. 11 2
892 240.74 wind 5.0 270 < th dose independent rect. 23 1
907 240.84 temperature 10.0 1440 > th dose independent rect. 24 4
910 240.84 temperature 30.0 1440 < th dose independent rect. 24 4
914 240.84 humidity 50.0 1440 > th dose independent rect. 24 4
923 240.84 atmosphere 995.0 1440 > th dose independent rect. 24 4
924 240.84 radiation 1.0 1440 < th dose independent rect. 24 4
944 240.84 temperature 10.0 1440 > th dose independent rect. 4 20
947 240.84 radiation 1.0 1440 < th dose dependent rect. 24 4
952 240.85 atmosphere 995.0 10 > th dose independent rect. 23 17
960 240.91 atmosphere 1015.0 270 < th dose independent rect. 23 1
968 241.01 atmosphere 1015.0 270 < th dose independent rect. 9 18