FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0653000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.56 (0.084) R2 : 0.494
β1 : -4.08 (0.36) R2dD : 0.209 R2D : 0.328
β2 : 0.826 (0.21) R2dC : 0.017 R2C : 0.0117
β3 : 3.5 (0.453) R2dE : 0.114 R2E : 0.275
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.536 (0.197) R2dN8 : 0.0152 R2N8 : 0.0149
σ : 1.52
deviance : 1063.76
__
_____
C
peak time of C : 7.29
E
wheather : radiation
threshold : 30.55
memory length : 4946
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 16
open length of G : 16

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
1068.7 1.54 4.52 -4.44 0.787 2.29 0.706 -2.5 -0.614 6.94 30.18 4467 16 16
1071.15 1.52 4.52 -4.35 0.843 2.84 0.726 -- -0.618 6.84 30.18 4684 15.9 16
1069.54 1.52 4.52 -4.42 0.788 2.31 -- -2.44 -0.607 7.35 30.14 4466 16 16
1063.76 1.52 4.56 -4.08 0.826 3.5 -- -- -0.536 7.29 30.55 4946 16 16
1102.7 1.55 4.52 -4.41 -- 2.33 -- -2.48 -0.604 -- 30.08 4466 16 16
1217.16 1.64 4.71 -5.59 0.841 -- 0.888 -- -1.26 6.58 -- -- -- --
1218.39 1.63 4.71 -5.58 0.848 -- -- -- -1.26 7.07 -- -- -- --
1097.02 1.54 4.56 -3.85 -- 3.71 -- -- -0.46 -- 30.67 5024 16 16
1186.97 1.6 4.51 -- 0.632 4.38 -- -- -0.133 7.19 31.96 16816 16 15.9
1256.31 1.66 4.73 -5.56 -- -- -- -- -1.25 -- -- -- -- --
2037.76 2.11 4.57 -- 0.794 -- -- -- -0.644 7.51 -- -- -- --
1187.21 1.6 4.38 -- -- 4.46 -- -- 0.227 -- 33.05 19052 16.1 15.6
2071.48 2.12 4.59 -- -- -- -- -- -0.633 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 1065.84 wind 1.0 14400 < th dose independent rect. 22 5
2 1070.14 wind 1.0 14400 > th dose independent rect. 23 4
5 1072.30 wind 1.0 14400 < th dose independent rect. 20 8
7 1075.56 wind 1.0 14400 > th dose independent rect. 20 8
12 1080.49 wind 1.0 14400 < th dose independent rect. 17 11
14 1081.79 wind 1.0 14400 < th dose dependent rect. 16 12
17 1083.24 wind 1.0 14400 < th dose dependent rect. 14 14
19 1083.40 wind 1.0 14400 < th dose dependent rect. 22 6
24 1084.85 wind 1.0 14400 > th dose independent rect. 17 11
42 1094.99 radiation 30.0 4320 > th dose independent rect. 16 16
43 1096.01 radiation 10.0 1440 < th dose independent rect. 15 2
45 1096.77 wind 1.0 14400 < th dose independent rect. 14 14
54 1099.31 radiation 20.0 4320 > th dose dependent rect. 16 16
57 1099.95 wind 3.0 14400 < th dose dependent rect. 22 2
60 1100.31 atmosphere 995.0 43200 < th dose dependent rect. 12 18
63 1100.55 wind 1.0 14400 < th dose dependent sin 14 NA
65 1100.69 radiation 30.0 4320 > th dose independent rect. 7 1
80 1100.86 wind 9.0 43200 < th dose independent rect. 15 2
84 1101.65 atmosphere 995.0 43200 > th dose independent rect. 18 19
85 1101.95 wind 1.0 14400 > th dose independent rect. 14 14
86 1102.00 wind 9.0 43200 > th dose independent rect. 15 2
107 1104.13 atmosphere 995.0 43200 < th dose independent rect. 18 18
109 1104.58 atmosphere 995.0 43200 < th dose dependent sin 16 NA
110 1104.63 wind 9.0 43200 > th dose dependent rect. 15 2
113 1104.81 radiation 10.0 1440 < th dose independent rect. 15 12
116 1105.02 radiation 10.0 1440 < th dose independent rect. 15 10
121 1105.23 atmosphere 995.0 43200 > th dose independent sin 7 NA
122 1105.32 radiation 30.0 4320 > th dose dependent rect. 7 1
141 1105.60 atmosphere 995.0 43200 < th dose independent rect. 17 20
152 1106.13 atmosphere 995.0 43200 < th dose dependent rect. 14 19
161 1106.76 wind 9.0 43200 < th dose independent rect. 15 5
168 1107.25 atmosphere 995.0 43200 < th dose independent rect. 21 18
192 1108.40 atmosphere 995.0 43200 > th dose independent rect. 20 17
194 1108.48 atmosphere 995.0 43200 < th dose independent sin 7 NA
202 1109.38 radiation 30.0 4320 < th dose independent rect. 6 2
209 1109.58 radiation 10.0 1440 < th dose independent rect. 11 7
215 1109.74 wind 9.0 43200 > th dose independent rect. 15 5
221 1110.05 radiation 30.0 4320 < th dose independent rect. 21 11
224 1110.16 radiation 20.0 14400 < th dose independent rect. 3 3
225 1110.17 wind 1.0 14400 < th dose independent sin 14 NA
229 1110.35 radiation 10.0 1440 < th dose independent sin 16 NA
235 1110.71 wind 3.0 4320 > th dose independent rect. 8 1
256 1110.88 radiation 30.0 4320 < th dose independent rect. 19 13
263 1111.45 radiation 30.0 4320 < th dose independent rect. 17 15
270 1111.67 radiation 30.0 4320 < th dose independent rect. 2 6
272 1111.69 radiation 10.0 1440 < th dose independent rect. 11 16
275 1111.81 radiation 10.0 1440 < th dose independent rect. 11 14
282 1112.01 wind 3.0 14400 < th dose dependent rect. 1 1
284 1112.07 atmosphere 995.0 43200 < th dose independent rect. 21 15
287 1112.09 atmosphere 995.0 43200 < th dose dependent sin 10 NA
293 1112.17 radiation 10.0 1440 < th dose independent rect. 11 19
294 1112.20 wind 3.0 4320 < th dose independent rect. 8 1
299 1112.36 precipitation 0.1 14400 > th dose independent rect. 12 1
300 1112.36 precipitation 0.1 14400 > th dose dependent rect. 12 1
316 1112.98 wind 1.0 14400 > th dose independent sin 14 NA
335 1113.53 wind 9.0 14400 < th dose independent rect. 23 2
361 1114.34 wind 3.0 14400 < th dose independent rect. 22 1
369 1115.11 wind 3.0 4320 < th dose dependent rect. 6 1
375 1115.17 wind 1.0 14400 < th dose dependent rect. 16 16
380 1115.21 wind 1.0 14400 < th dose dependent rect. 14 18
420 1116.03 atmosphere 995.0 43200 < th dose dependent rect. 21 12
426 1116.18 radiation 20.0 1440 < th dose dependent rect. 11 1
434 1116.36 wind 9.0 43200 < th dose independent rect. 15 19
435 1116.48 wind 3.0 14400 > th dose independent rect. 22 1
488 1117.40 wind 7.0 43200 > th dose dependent rect. 21 22
538 1117.83 wind 7.0 43200 > th dose dependent rect. 21 20
552 1118.16 wind 9.0 43200 > th dose independent rect. 15 19
553 1118.18 wind 7.0 43200 < th dose independent rect. 16 14
554 1118.18 wind 9.0 43200 > th dose independent rect. 21 22
567 1118.44 temperature 20.0 4320 > th dose independent rect. 20 1
568 1118.49 wind 9.0 43200 < th dose independent rect. 21 23
573 1118.56 wind 7.0 43200 > th dose dependent rect. 15 19
590 1118.89 atmosphere 995.0 43200 > th dose independent rect. 3 6
593 1118.92 wind 9.0 14400 > th dose independent rect. 23 2
594 1118.95 atmosphere 995.0 43200 < th dose independent rect. 2 7
601 1119.04 wind 7.0 43200 > th dose independent rect. 16 14
620 1119.35 atmosphere 995.0 43200 < th dose independent rect. 4 4
621 1119.35 wind 9.0 14400 > th dose dependent rect. 23 2
634 1119.50 wind 9.0 14400 < th dose independent rect. 23 4
656 1119.86 wind 9.0 43200 > th dose dependent rect. 10 7
657 1119.87 atmosphere 995.0 43200 > th dose independent rect. 5 3
665 1119.97 wind 9.0 43200 > th dose independent rect. 15 22
668 1120.04 wind 1.0 14400 < th dose dependent rect. 19 13
691 1120.56 atmosphere 995.0 43200 < th dose dependent rect. 3 5
708 1120.84 humidity 50.0 1440 < th dose independent rect. 16 1
713 1120.95 wind 7.0 43200 < th dose independent sin 12 NA
716 1120.99 wind 9.0 43200 > th dose independent rect. 1 19
726 1121.14 wind 3.0 14400 < th dose independent rect. 7 3
728 1121.16 humidity 50.0 1440 < th dose dependent rect. 16 1
739 1121.26 wind 3.0 14400 > th dose independent rect. 7 3
744 1121.30 wind 9.0 43200 > th dose independent rect. 4 16
767 1121.50 wind 7.0 43200 > th dose dependent rect. 1 16
784 1121.70 temperature 20.0 4320 < th dose independent rect. 20 1
789 1121.73 wind 9.0 43200 < th dose independent rect. 1 19
810 1121.91 wind 9.0 43200 < th dose independent rect. 3 17
834 1122.13 wind 7.0 43200 > th dose independent sin 12 NA
837 1122.15 wind 1.0 14400 > th dose dependent rect. 22 2
843 1122.20 radiation 20.0 1440 < th dose independent rect. 11 22
853 1122.29 radiation 1.0 1440 > th dose dependent rect. 15 15
863 1122.35 humidity 90.0 4320 > th dose dependent rect. 3 15
875 1122.46 wind 9.0 43200 > th dose independent rect. 18 23
889 1122.61 wind 9.0 43200 > th dose independent rect. 12 23
891 1122.63 wind 1.0 14400 < th dose dependent rect. 6 22
896 1122.72 wind 9.0 43200 > th dose independent rect. 1 23
900 1122.75 wind 9.0 43200 > th dose independent no NA NA
902 1122.76 wind 9.0 43200 > th dose independent rect. 4 23
904 1122.79 wind 9.0 43200 > th dose independent rect. 6 23
905 1122.79 wind 7.0 43200 > th dose dependent rect. 18 23
953 1123.13 wind 9.0 43200 > th dose independent sin 1 NA
964 1123.18 wind 7.0 43200 > th dose dependent no NA NA
976 1123.21 wind 7.0 43200 > th dose dependent rect. 1 23
980 1123.28 wind 7.0 43200 > th dose dependent rect. 7 23
981 1123.29 wind 7.0 43200 > th dose dependent rect. 11 23
984 1123.31 wind 9.0 43200 < th dose independent rect. 11 23
989 1123.33 radiation 40.0 1440 < th dose dependent rect. 11 1