Os02g0651900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0651900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 179.7 | 0.63 | 12.5 | 1.49 | 0.726 | 1.58 | -0.664 | -0.17 | -0.613 | 19.2 | 24.84 | 409 | -- | -- |
| 179.73 | 0.624 | 12.5 | 1.47 | 0.723 | 1.6 | -0.63 | -- | -0.622 | 19.2 | 24.73 | 419 | -- | -- |
| 180.75 | 0.626 | 12.5 | 1.45 | 0.726 | 1.61 | -- | 0.159 | -0.627 | 19.3 | 24.7 | 424 | -- | -- |
| 180.78 | 0.626 | 12.5 | 1.48 | 0.725 | 1.59 | -- | -- | -0.622 | 19.2 | 24.8 | 416 | -- | -- |
| 203.46 | 0.664 | 12.5 | 1.66 | -- | 1.5 | -- | -0.824 | -0.563 | -- | 25.2 | 1366 | -- | -- |
| 216.32 | 0.69 | 12.6 | 1.06 | 0.55 | -- | -0.55 | -- | -0.934 | 19.5 | -- | -- | -- | -- |
| 217.15 | 0.69 | 12.6 | 1.07 | 0.549 | -- | -- | -- | -0.935 | 19.5 | -- | -- | -- | -- |
| 204.14 | 0.665 | 12.5 | 1.53 | -- | 1.52 | -- | -- | -0.614 | -- | 24.8 | 1325 | -- | -- |
| 232.03 | 0.709 | 12.6 | -- | 0.634 | 0.973 | -- | -- | -0.893 | 19.4 | 24.76 | 401 | -- | -- |
| 233.3 | 0.714 | 12.6 | 1.06 | -- | -- | -- | -- | -0.943 | -- | -- | -- | -- | -- |
| 247.23 | 0.736 | 12.6 | -- | 0.54 | -- | -- | -- | -1.05 | 19.7 | -- | -- | -- | -- |
| 252.5 | 0.74 | 12.6 | -- | -- | 0.92 | -- | -- | -0.927 | -- | 23.88 | 361 | -- | -- |
| 262.95 | 0.757 | 12.6 | -- | -- | -- | -- | -- | -1.06 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 177.55 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 18 | 16 |
| 18 | 178.46 | temperature | 25.0 | 720 | < th | dose dependent | sin | 11 | NA |
| 23 | 178.69 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 22 | 17 |
| 27 | 178.82 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 21 | 19 |
| 31 | 178.96 | temperature | 15.0 | 270 | > th | dose dependent | sin | 7 | NA |
| 40 | 179.15 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 43 | 179.18 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 47 | 179.33 | temperature | 30.0 | 270 | < th | dose dependent | sin | 7 | NA |
| 57 | 179.55 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 65 | 179.72 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 19 | 10 |
| 73 | 179.81 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 24 | 5 |
| 91 | 180.05 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 118 | 180.29 | radiation | 40.0 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 142 | 180.53 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 14 | 2 |
| 157 | 180.72 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 1 | 22 |
| 159 | 180.74 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 173 | 180.89 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 178 | 180.94 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 21 | 23 |
| 206 | 181.19 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 22 | 5 |
| 225 | 181.38 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 226 | 181.38 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 20 | 14 |
| 256 | 181.58 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 260 | 181.61 | radiation | 20.0 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 262 | 181.61 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 15 | 14 |
| 265 | 181.65 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 20 | 15 |
| 269 | 181.67 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 21 | 14 |
| 272 | 181.67 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 24 | 1 |
| 275 | 181.70 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 21 | 12 |
| 277 | 181.70 | humidity | 70.0 | 43200 | < th | dose dependent | rect. | 22 | 14 |
| 283 | 181.72 | temperature | 25.0 | 270 | < th | dose dependent | no | NA | NA |
| 291 | 181.74 | humidity | 70.0 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 314 | 181.88 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 23 | 11 |
| 329 | 181.93 | temperature | 15.0 | 720 | > th | dose dependent | sin | 10 | NA |
| 345 | 181.99 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 20 | 6 |
| 346 | 181.99 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 3 | 8 |
| 353 | 182.01 | humidity | 70.0 | 43200 | < th | dose dependent | rect. | 8 | 4 |
| 362 | 182.03 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 14 | 2 |
| 367 | 182.03 | radiation | 10.0 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 374 | 182.04 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 12 | 16 |
| 385 | 182.07 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 2 | 7 |
| 407 | 182.13 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 5 | 3 |
| 408 | 182.13 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 4 | 4 |
| 419 | 182.15 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 9 | 4 |
| 422 | 182.15 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 9 | 4 |
| 426 | 182.16 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 3 | 6 |
| 448 | 182.23 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 461 | 182.27 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 462 | 182.27 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 470 | 182.30 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 472 | 182.30 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 477 | 182.31 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 481 | 182.32 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 3 | 5 |
| 496 | 182.37 | radiation | 20.0 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 497 | 182.37 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 9 | 4 |
| 503 | 182.37 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 9 | 4 |
| 531 | 182.47 | radiation | 40.0 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 537 | 182.48 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 7 | 23 |
| 539 | 182.49 | radiation | 20.0 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 543 | 182.51 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 559 | 182.56 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 4 |
| 607 | 182.65 | radiation | 20.0 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 617 | 182.68 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 20 | 2 |
| 627 | 182.73 | atmosphere | 995.0 | 43200 | < th | dose dependent | sin | 10 | NA |
| 640 | 182.76 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 659 | 182.79 | radiation | 20.0 | 43200 | < th | dose independent | rect. | 9 | 5 |
| 667 | 182.80 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 11 | 12 |
| 695 | 182.85 | temperature | 25.0 | 4320 | > th | dose dependent | sin | 19 | NA |
| 714 | 182.89 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 3 | 2 |
| 725 | 182.93 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 729 | 182.94 | radiation | 40.0 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 734 | 182.95 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 10 | 14 |
| 742 | 182.97 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 11 | 12 |
| 763 | 183.01 | radiation | 30.0 | 43200 | < th | dose dependent | rect. | 8 | 3 |
| 792 | 183.06 | radiation | 40.0 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 868 | 183.16 | humidity | 70.0 | 43200 | < th | dose dependent | sin | 8 | NA |
| 876 | 183.17 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 13 | NA |
| 951 | 183.29 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 980 | 183.34 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 21 | 19 |
| 983 | 183.35 | atmosphere | 995.0 | 43200 | < th | dose independent | sin | 8 | NA |
| 986 | 183.35 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 20 | 17 |
| 1000 | 183.38 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 24 | 1 |