Os02g0649900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Iron-phytosiderophore transporter protein yellow stripe 1.
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Os02g0649900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Iron-phytosiderophore transporter protein yellow stripe 1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 52.51 | 0.34 | 3 | -0.143 | 0.152 | 3.22 | -0.415 | -9.6 | 0.0716 | 6.82 | 1.293 | 256 | -- | -- |
| 52.6 | 0.338 | 2.98 | -0.0592 | 0.154 | 1.08 | -0.42 | -- | 0.0738 | 6.66 | 1.509 | 256 | -- | -- |
| 52.92 | 0.339 | 3.01 | -0.146 | 0.156 | 3.23 | -- | -9.47 | 0.0683 | 7.24 | 1.211 | 255 | -- | -- |
| 52.99 | 0.339 | 2.98 | -0.0703 | 0.153 | 1.13 | -- | -- | 0.0732 | 7.32 | 1.494 | 201 | -- | -- |
| 54.13 | 0.343 | 3.01 | -0.154 | -- | 3.15 | -- | -9.53 | 0.0758 | -- | 1.127 | 255 | -- | -- |
| 55.25 | 0.348 | 2.99 | -0.0351 | 0.124 | -- | -0.555 | -- | 0.0654 | 6.65 | -- | -- | -- | -- |
| 56.01 | 0.35 | 2.98 | -0.043 | 0.123 | -- | -- | -- | 0.0674 | 7.3 | -- | -- | -- | -- |
| 54.22 | 0.343 | 2.99 | -0.0651 | -- | 1.05 | -- | -- | 0.0752 | -- | 1.5 | 186 | -- | -- |
| 53.12 | 0.339 | 2.98 | -- | 0.152 | 1.12 | -- | -- | 0.0808 | 7.35 | 1.5 | 209 | -- | -- |
| 56.8 | 0.352 | 2.99 | -0.0409 | -- | -- | -- | -- | 0.0695 | -- | -- | -- | -- | -- |
| 56.06 | 0.35 | 2.98 | -- | 0.122 | -- | -- | -- | 0.0722 | 7.33 | -- | -- | -- | -- |
| 54.33 | 0.343 | 2.98 | -- | -- | 1.03 | -- | -- | 0.0824 | -- | 1.5 | 208 | -- | -- |
| 56.85 | 0.352 | 2.99 | -- | -- | -- | -- | -- | 0.074 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 36.50 | humidity | 80 | 10 | < th | dose dependent | rect. | 7 | 1 |
| 3 | 36.50 | humidity | 80 | 10 | < th | dose dependent | rect. | 4 | 4 |
| 10 | 36.50 | humidity | 70 | 90 | < th | dose dependent | rect. | 18 | 14 |
| 25 | 36.53 | humidity | 70 | 30 | < th | dose independent | rect. | 18 | 14 |
| 51 | 36.61 | humidity | 80 | 90 | < th | dose independent | rect. | 6 | 1 |
| 52 | 36.61 | humidity | 70 | 10 | < th | dose independent | rect. | 7 | 1 |
| 174 | 36.62 | radiation | 20 | 90 | > th | dose independent | rect. | 6 | 1 |
| 189 | 36.62 | radiation | 20 | 90 | > th | dose dependent | rect. | 6 | 1 |
| 637 | 39.60 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 7 | 1 |
| 812 | 42.91 | radiation | 30 | 30 | < th | dose independent | sin | 11 | NA |
| 876 | 44.66 | humidity | 70 | 10 | < th | dose independent | sin | 11 | NA |
| 916 | 44.91 | radiation | 20 | 10 | > th | dose independent | sin | 11 | NA |
| 992 | 45.79 | humidity | 70 | 10 | > th | dose independent | sin | 11 | NA |