Os02g0649000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os02g0649000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 159.78 | 0.594 | 6.33 | -2.71 | 1.22 | 1.59 | 0.718 | -3.36 | -0.335 | 2.45 | 18.27 | 1383 | -- | -- |
| 164.69 | 0.598 | 6.23 | -2.15 | 1.23 | 1.82 | 0.596 | -- | -0.148 | 2.49 | 14.13 | 5498 | -- | -- |
| 161.56 | 0.592 | 6.33 | -2.71 | 1.24 | 1.59 | -- | -3.24 | -0.336 | 2.45 | 18.21 | 1416 | -- | -- |
| 165.63 | 0.599 | 6.24 | -2.18 | 1.24 | 1.86 | -- | -- | -0.164 | 2.48 | 14.03 | 5550 | -- | -- |
| 239.7 | 0.721 | 6.32 | -2.64 | -- | 2.07 | -- | -2.43 | -0.316 | -- | 11.58 | 2558 | -- | -- |
| 226.92 | 0.706 | 6.15 | -1.25 | 1.33 | -- | 0.597 | -- | 0.244 | 2.44 | -- | -- | -- | -- |
| 228.21 | 0.707 | 6.15 | -1.27 | 1.33 | -- | -- | -- | 0.241 | 2.45 | -- | -- | -- | -- |
| 245.39 | 0.73 | 6.23 | -2.03 | -- | 2.06 | -- | -- | -0.153 | -- | 9.742 | 2569 | -- | -- |
| 248.13 | 0.734 | 6.15 | -- | 1.2 | 1.09 | -- | -- | 0.224 | 2.48 | -7.79 | 1271 | -- | -- |
| 333.13 | 0.853 | 6.14 | -1.21 | -- | -- | -- | -- | 0.274 | -- | -- | -- | -- | -- |
| 270.51 | 0.769 | 6.12 | -- | 1.31 | -- | -- | -- | 0.382 | 2.43 | -- | -- | -- | -- |
| 320.72 | 0.834 | 6.16 | -- | -- | 1.21 | -- | -- | 0.194 | -- | 21.6 | 1128 | -- | -- |
| 371.77 | 0.9 | 6.11 | -- | -- | -- | -- | -- | 0.408 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 157.98 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 5 |
| 3 | 158.17 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 4 | 158.17 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 3 |
| 8 | 158.33 | radiation | 30 | 14400 | > th | dose dependent | rect. | 16 | 16 |
| 11 | 158.37 | radiation | 20 | 14400 | > th | dose dependent | rect. | 17 | 14 |
| 17 | 158.65 | temperature | 15 | 1440 | > th | dose dependent | rect. | 15 | 12 |
| 18 | 158.67 | temperature | 15 | 1440 | > th | dose dependent | rect. | 15 | 10 |
| 55 | 159.06 | radiation | 20 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 77 | 159.16 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 95 | 159.23 | temperature | 15 | 1440 | > th | dose dependent | sin | 15 | NA |
| 113 | 159.37 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 161 | 159.72 | radiation | 30 | 14400 | > th | dose independent | rect. | 16 | 16 |
| 166 | 159.75 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 16 |
| 220 | 160.16 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 17 |
| 228 | 160.19 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 234 | 160.22 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 237 | 160.23 | radiation | 10 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 390 | 160.76 | wind | 5 | 43200 | < th | dose independent | rect. | 8 | 8 |
| 391 | 160.76 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 4 |
| 403 | 160.79 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 442 | 160.91 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 446 | 160.94 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 9 |
| 456 | 160.97 | wind | 5 | 43200 | > th | dose independent | rect. | 8 | 8 |
| 473 | 161.00 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 490 | 161.07 | wind | 5 | 43200 | > th | dose independent | rect. | 7 | 10 |
| 513 | 161.14 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 9 |
| 526 | 161.18 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 11 |
| 557 | 161.26 | temperature | 25 | 4320 | < th | dose dependent | rect. | 13 | 18 |
| 642 | 161.44 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 656 | 161.46 | temperature | 25 | 4320 | > th | dose independent | rect. | 8 | 8 |
| 690 | 161.52 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 1 |
| 716 | 161.57 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 736 | 161.61 | temperature | 25 | 4320 | < th | dose dependent | sin | 13 | NA |
| 839 | 161.77 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 21 |
| 856 | 161.79 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 19 |
| 857 | 161.79 | temperature | 25 | 4320 | < th | dose dependent | rect. | 23 | 19 |
| 870 | 161.81 | temperature | 25 | 4320 | < th | dose dependent | rect. | 23 | 16 |
| 884 | 161.82 | temperature | 25 | 4320 | < th | dose dependent | rect. | 17 | 22 |
| 917 | 161.85 | temperature | 25 | 4320 | < th | dose dependent | rect. | 23 | 23 |
| 921 | 161.86 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 12 |
| 958 | 161.89 | radiation | 30 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 959 | 161.89 | temperature | 25 | 4320 | < th | dose dependent | no | NA | NA |
| 974 | 161.91 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 981 | 161.92 | temperature | 15 | 4320 | > th | dose dependent | rect. | 3 | 1 |