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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0648900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.49 (0.0272) R2 : 0.00237
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0595 (0.0572) R2dN8 : 0.00306 R2N8 : 0.00237
σ : 0.512
deviance : 120.18
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
103.11 0.477 4.48 -0.0997 0.428 -1.13 0.0648 -1.06 -0.0282 10.5 19.9 3554 -- --
103.43 0.474 4.5 -0.0709 0.446 -0.704 0.0148 -- -0.0326 10.6 21.14 2229 -- --
103.11 0.473 4.48 -0.101 0.422 -1.15 -- -1.08 -0.0215 10.5 19.68 3559 -- --
103.42 0.474 4.5 -0.0826 0.446 -0.676 -- -- -0.0333 10.5 21.07 2321 -- --
114.04 0.497 4.5 -0.0845 -- -1.05 -- -0.806 -0.0195 -- 19.42 3200 -- --
109.06 0.49 4.48 0.179 0.411 -- 0.0522 -- 0.0801 10.4 -- -- -- --
109.07 0.489 4.48 0.181 0.411 -- -- -- 0.0802 10.4 -- -- -- --
114.12 0.498 4.52 -0.116 -- -0.759 -- -- -0.0336 -- 20.06 2963 -- --
103.55 0.474 4.5 -- 0.441 -0.644 -- -- -0.0179 10.5 21.17 2229 -- --
119.39 0.511 4.49 0.174 -- -- -- -- 0.0788 -- -- -- -- --
109.93 0.49 4.48 -- 0.41 -- -- -- 0.0601 10.4 -- -- -- --
114.34 0.498 4.51 -- -- -0.678 -- -- -0.00661 -- 19.91 2937 -- --
120.18 0.512 4.49 -- -- -- -- -- 0.0595 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 89.37 atmosphere 1005.0 90 > th dose dependent rect. 2 1
2 90.59 atmosphere 1005.0 10 > th dose dependent rect. 2 1
4 90.76 temperature 15.0 30 > th dose independent rect. 3 23
7 90.91 wind 1.0 30 > th dose independent rect. 2 1
9 90.98 temperature 30.0 30 < th dose dependent rect. 2 1
11 91.03 wind 5.0 10 < th dose dependent rect. 2 1
14 91.05 wind 5.0 10 < th dose independent rect. 2 1
25 91.10 temperature 10.0 30 > th dose independent rect. 2 1
27 91.10 temperature 30.0 30 < th dose independent rect. 2 1
28 91.10 humidity 50.0 30 > th dose independent rect. 2 1
31 91.10 atmosphere 1005.0 10 > th dose independent rect. 2 1
32 91.10 atmosphere 995.0 30 > th dose independent rect. 2 1
34 91.10 atmosphere 1010.0 30 < th dose independent rect. 2 1
36 91.10 radiation 1.0 30 < th dose independent rect. 2 1
41 91.10 precipitation 0.1 30 < th dose independent rect. 2 1
44 91.10 radiation 1.0 30 < th dose dependent rect. 2 1
49 91.10 precipitation 0.1 30 < th dose dependent rect. 2 1
53 91.12 atmosphere 1015.0 30 < th dose dependent rect. 2 1
55 91.15 temperature 10.0 30 > th dose dependent rect. 2 1
58 91.18 humidity 50.0 30 > th dose dependent rect. 2 1
87 91.23 humidity 90.0 30 > th dose independent rect. 2 1
113 92.35 radiation 1.0 43200 < th dose dependent rect. 3 1
114 92.45 precipitation 0.1 30 < th dose independent rect. 3 23
115 92.45 precipitation 0.1 30 < th dose dependent rect. 3 23
118 92.79 wind 9.0 30 < th dose independent rect. 3 23
119 92.81 atmosphere 1000.0 30 > th dose independent rect. 3 23
128 93.53 radiation 1.0 4320 < th dose dependent rect. 3 1
133 93.61 wind 9.0 1440 < th dose independent rect. 3 1
134 93.61 temperature 10.0 1440 > th dose independent rect. 3 1
137 93.61 temperature 30.0 1440 < th dose independent rect. 3 1
141 93.61 humidity 50.0 1440 > th dose independent rect. 3 1
150 93.61 atmosphere 995.0 1440 > th dose independent rect. 3 1
151 93.61 radiation 1.0 1440 < th dose independent rect. 3 1
171 93.61 temperature 10.0 1440 > th dose independent rect. 4 23
196 94.80 humidity 90.0 90 < th dose independent rect. 2 1
199 95.39 humidity 50.0 30 > th dose independent rect. 3 23
249 97.46 atmosphere 1015.0 30 < th dose independent rect. 3 23
250 97.54 wind 9.0 10 < th dose dependent rect. 17 11
258 98.05 radiation 40.0 10 < th dose dependent rect. 3 23
262 98.17 wind 5.0 10 < th dose independent rect. 16 12
272 98.50 wind 9.0 90 < th dose independent rect. 6 22
290 98.92 wind 1.0 10 < th dose independent rect. 14 13
296 98.98 wind 9.0 720 < th dose independent rect. 15 12
300 99.03 precipitation 0.1 90 < th dose independent rect. 6 22
301 99.03 precipitation 0.1 90 < th dose dependent rect. 6 22
305 99.07 radiation 30.0 90 < th dose dependent rect. 4 2
307 99.08 humidity 80.0 90 > th dose independent rect. 4 2
313 99.11 wind 9.0 90 < th dose independent rect. 4 2
314 99.11 temperature 10.0 90 > th dose independent rect. 4 2
316 99.11 temperature 30.0 90 < th dose independent rect. 4 2
317 99.11 humidity 50.0 90 > th dose independent rect. 4 2
320 99.11 atmosphere 995.0 90 > th dose independent rect. 4 2
321 99.11 atmosphere 1010.0 90 < th dose independent rect. 4 2
323 99.11 radiation 20.0 90 < th dose independent rect. 4 2
327 99.11 temperature 10.0 90 > th dose independent rect. 6 22
337 99.20 precipitation 0.1 90 < th dose independent rect. 4 2
338 99.20 humidity 50.0 90 > th dose dependent rect. 4 2
339 99.20 precipitation 0.1 90 < th dose dependent rect. 4 2
340 99.22 radiation 40.0 30 < th dose independent rect. 3 23
343 99.24 temperature 10.0 90 > th dose dependent rect. 4 2
347 99.31 radiation 1.0 90 < th dose independent rect. 4 2
352 99.40 wind 1.0 10 < th dose independent rect. 7 20
355 99.44 temperature 20.0 720 > th dose independent rect. 10 5
362 99.55 precipitation 0.1 720 < th dose independent rect. 15 12
364 99.55 precipitation 0.1 720 < th dose dependent rect. 15 12
368 99.61 atmosphere 995.0 90 > th dose dependent rect. 4 2
371 99.62 atmosphere 995.0 90 > th dose independent rect. 6 22
373 99.67 radiation 10.0 720 < th dose independent rect. 3 4
374 99.68 atmosphere 995.0 30 > th dose dependent rect. 18 10
377 99.73 wind 9.0 90 < th dose dependent rect. 4 2
385 99.78 humidity 50.0 30 > th dose dependent rect. 3 23
388 99.82 temperature 20.0 30 > th dose independent rect. 3 15
411 99.97 wind 9.0 4320 < th dose independent rect. 5 2
415 100.02 radiation 1.0 90 < th dose independent rect. 4 9
433 100.08 radiation 10.0 90 < th dose dependent rect. 4 5
449 100.09 humidity 50.0 90 > th dose independent rect. 3 15
464 100.15 temperature 10.0 1440 > th dose independent rect. 5 2
467 100.15 temperature 30.0 1440 < th dose independent rect. 5 2
471 100.15 humidity 50.0 1440 > th dose independent rect. 5 2
476 100.15 atmosphere 995.0 1440 > th dose independent rect. 5 2
477 100.15 atmosphere 1015.0 1440 < th dose independent rect. 5 2
478 100.15 radiation 40.0 1440 < th dose independent rect. 5 2
482 100.15 temperature 10.0 1440 > th dose independent rect. 7 22
489 100.17 atmosphere 1015.0 90 < th dose dependent rect. 4 2
491 100.18 humidity 50.0 720 > th dose independent rect. 3 12
493 100.19 atmosphere 995.0 720 > th dose independent rect. 3 12
494 100.19 temperature 10.0 720 > th dose dependent rect. 3 3
501 100.23 humidity 50.0 270 > th dose dependent rect. 19 11
532 100.34 wind 9.0 720 < th dose independent rect. 15 19
550 100.36 atmosphere 1015.0 90 < th dose independent rect. 6 22
558 100.41 radiation 30.0 90 < th dose dependent rect. 15 12
561 100.42 radiation 1.0 90 < th dose dependent rect. 4 9
566 100.44 radiation 10.0 90 < th dose dependent rect. 4 7
575 100.46 temperature 10.0 720 > th dose independent rect. 3 12
576 100.46 temperature 10.0 720 > th dose independent rect. 15 12
582 100.47 wind 9.0 90 < th dose dependent rect. 6 22
583 100.48 atmosphere 1000.0 30 > th dose independent rect. 4 14
590 100.53 wind 1.0 720 > th dose independent rect. 15 10
597 100.55 radiation 10.0 90 < th dose independent rect. 17 10
607 100.57 temperature 30.0 90 < th dose dependent rect. 4 1
618 100.60 wind 7.0 720 < th dose independent rect. 15 3
624 100.61 radiation 10.0 30 < th dose dependent rect. 18 10
627 100.62 temperature 25.0 270 > th dose independent rect. 23 4
631 100.63 precipitation 0.1 30 < th dose independent rect. 18 10
636 100.63 precipitation 0.1 30 < th dose dependent rect. 18 10
637 100.64 temperature 20.0 30 > th dose independent rect. 3 6
638 100.64 temperature 10.0 30 > th dose independent rect. 18 10
639 100.64 humidity 50.0 30 > th dose independent rect. 18 10
640 100.64 atmosphere 995.0 30 > th dose independent rect. 18 10
644 100.64 temperature 10.0 30 > th dose independent rect. 4 14
646 100.64 atmosphere 1015.0 30 < th dose independent rect. 4 14
700 100.72 radiation 30.0 30 < th dose dependent rect. 4 5
704 100.74 wind 7.0 720 < th dose independent rect. 22 5
708 100.74 wind 9.0 10 < th dose dependent rect. 7 21
712 100.76 temperature 10.0 30 > th dose dependent rect. 3 23
713 100.77 precipitation 0.1 30 < th dose independent rect. 4 14
715 100.77 precipitation 0.1 30 < th dose dependent rect. 4 14
729 100.80 temperature 25.0 270 > th dose dependent rect. 23 4
749 100.85 radiation 40.0 720 < th dose independent rect. 15 12
752 100.86 wind 1.0 10 > th dose independent rect. 14 16
759 100.88 radiation 20.0 10 < th dose independent rect. 4 5
763 100.88 radiation 40.0 90 < th dose dependent rect. 3 10
797 100.96 atmosphere 1015.0 720 < th dose independent rect. 3 12
808 100.97 humidity 90.0 90 < th dose independent rect. 1 13
816 100.98 radiation 10.0 720 < th dose dependent rect. 3 3
830 101.01 temperature 20.0 720 > th dose independent rect. 3 19
875 101.09 wind 9.0 10 < th dose dependent rect. 9 19
907 101.14 humidity 90.0 90 < th dose independent rect. 1 10
908 101.14 radiation 1.0 90 < th dose independent rect. 4 14
909 101.14 precipitation 0.1 720 < th dose independent rect. 15 19
912 101.14 precipitation 0.1 720 < th dose dependent rect. 15 19
947 101.19 radiation 40.0 90 < th dose dependent rect. 3 12
980 101.22 humidity 80.0 90 > th dose dependent rect. 3 8
985 101.23 wind 9.0 30 < th dose independent rect. 4 14