Os02g0648100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os02g0648100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 156.81 | 0.588 | 8.58 | -1.95 | 1.23 | 1.87 | 2 | -2.66 | -0.454 | 4.16 | 20.97 | 1200 | -- | -- |
| 161.31 | 0.592 | 8.49 | -1.27 | 1.23 | 1.92 | 1.89 | -- | -0.272 | 4.22 | 18.23 | 1186 | -- | -- |
| 167.7 | 0.603 | 8.57 | -1.86 | 1.24 | 1.86 | -- | -2.29 | -0.43 | 4.27 | 21.34 | 1188 | -- | -- |
| 171.05 | 0.609 | 8.5 | -1.25 | 1.25 | 1.78 | -- | -- | -0.271 | 4.26 | 20.01 | 1181 | -- | -- |
| 248.27 | 0.734 | 8.59 | -1.96 | -- | 2.13 | -- | -2.55 | -0.463 | -- | 21.81 | 1192 | -- | -- |
| 247.56 | 0.738 | 8.41 | -0.614 | 1.44 | -- | 1.91 | -- | 0.133 | 3.68 | -- | -- | -- | -- |
| 258.55 | 0.753 | 8.41 | -0.644 | 1.45 | -- | -- | -- | 0.122 | 3.66 | -- | -- | -- | -- |
| 252.56 | 0.74 | 8.52 | -1.29 | -- | 2.07 | -- | -- | -0.3 | -- | 19.58 | 1190 | -- | -- |
| 206.31 | 0.669 | 8.45 | -- | 1.25 | 1.38 | -- | -- | -0.0515 | 4.2 | 21.7 | 1161 | -- | -- |
| 375.67 | 0.906 | 8.42 | -0.583 | -- | -- | -- | -- | 0.161 | -- | -- | -- | -- | -- |
| 269.48 | 0.768 | 8.4 | -- | 1.44 | -- | -- | -- | 0.194 | 3.66 | -- | -- | -- | -- |
| 289.11 | 0.792 | 8.46 | -- | -- | 1.62 | -- | -- | -0.0595 | -- | 22.08 | 1184 | -- | -- |
| 384.64 | 0.915 | 8.4 | -- | -- | -- | -- | -- | 0.226 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 153.55 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 11 |
| 3 | 154.13 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 9 |
| 6 | 154.60 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 8 | 155.31 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 5 |
| 10 | 155.70 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 18 | 156.36 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 8 |
| 27 | 157.02 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 7 |
| 48 | 157.63 | wind | 5 | 43200 | > th | dose independent | rect. | 13 | 17 |
| 61 | 157.77 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 18 |
| 81 | 157.99 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 12 |
| 83 | 158.03 | temperature | 20 | 1440 | > th | dose dependent | sin | 17 | NA |
| 90 | 158.09 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 20 |
| 106 | 158.23 | wind | 5 | 43200 | > th | dose independent | sin | 18 | NA |
| 114 | 158.27 | wind | 5 | 43200 | < th | dose independent | rect. | 13 | 17 |
| 166 | 158.53 | temperature | 15 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 202 | 158.68 | radiation | 10 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 225 | 158.75 | wind | 5 | 43200 | > th | dose independent | rect. | 6 | 15 |
| 240 | 158.78 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 21 |
| 264 | 158.87 | wind | 5 | 43200 | < th | dose independent | sin | 22 | NA |
| 272 | 158.89 | wind | 5 | 43200 | > th | dose independent | rect. | 9 | 8 |
| 288 | 158.97 | wind | 5 | 43200 | < th | dose independent | sin | 18 | NA |
| 299 | 159.01 | wind | 5 | 43200 | < th | dose independent | rect. | 6 | 15 |
| 323 | 159.10 | wind | 5 | 43200 | < th | dose independent | rect. | 4 | 17 |
| 359 | 159.22 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 362 | 159.22 | wind | 5 | 43200 | > th | dose dependent | rect. | 13 | 18 |
| 384 | 159.29 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 8 |
| 438 | 159.47 | wind | 5 | 43200 | > th | dose independent | rect. | 10 | 6 |
| 475 | 159.57 | wind | 5 | 43200 | < th | dose independent | rect. | 6 | 12 |
| 481 | 159.59 | wind | 5 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 726 | 160.13 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 6 |
| 760 | 160.23 | wind | 5 | 43200 | > th | dose dependent | rect. | 6 | 15 |
| 768 | 160.24 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 774 | 160.27 | humidity | 80 | 43200 | > th | dose independent | rect. | 21 | 2 |
| 802 | 160.34 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 859 | 160.43 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 894 | 160.53 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 903 | 160.56 | wind | 1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 914 | 160.59 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 22 |
| 928 | 160.62 | humidity | 80 | 43200 | < th | dose independent | rect. | 21 | 2 |
| 934 | 160.62 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 20 |
| 971 | 160.68 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 980 | 160.71 | temperature | 10 | 1440 | > th | dose dependent | no | NA | NA |