FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0647300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Leucine-rich repeat, plant specific containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.68 (0.256) R2 : 0.579
β1 : 17 (2.36) R2dD : 10.4 R2D : -12.8
β2 : 1.77 (0.124) R2dC : 0.217 R2C : -1.9
β3 : -16.6 (2.5) R2dE : 14.6 R2E : -20.6
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 173 (23.5) R2dD*E : 26.9 R2D*E : -20.5
γ1 : 0.297 (0.0965) R2dN8 : 0.012 R2N8 : -2.19
σ : 0.834
deviance : 320.31
__
_____
C
peak time of C : 6.53
E
wheather : temperature
threshold : 30.13
memory length : 850
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18
open length of G : 6.92

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
322.3 0.843 2.73 16.5 1.79 -16.5 -0.0165 172 0.291 6.53 30.12 766 18 2.99
474.64 1.02 4.58 -0.132 2.34 0.631 1.15 -- 0.0714 6.05 30.12 766 18 2.99
320.31 0.834 2.68 17 1.77 -16.6 -- 173 0.297 6.53 30.13 850 18 6.92
336.59 0.854 4.55 -0.534 1.75 2.15 -- -- 0.281 6.83 26.73 785 18.2 4.12
477.62 1.02 2.7 17.1 -- -16.6 -- 177 0.384 -- 29.99 842 18.1 0.884
475.48 1.02 4.58 -0.125 2.32 -- 1.11 -- 0.0667 6.04 -- -- -- --
478.49 1.02 4.58 -0.115 2.33 -- -- -- 0.0626 6.04 -- -- -- --
451.9 0.99 4.61 -0.458 -- 3.02 -- -- 0.131 -- 25.65 702 20 3.07
329 0.845 4.52 -- 1.68 2.34 -- -- 0.349 6.73 26.95 651 20 2.32
758.91 1.29 4.62 -0.0478 -- -- -- -- 0.115 -- -- -- -- --
478.84 1.02 4.58 -- 2.32 -- -- -- 0.0754 6.04 -- -- -- --
451.37 0.989 4.56 -- -- 3.12 -- -- 0.411 -- 28 690 20.4 2.47
758.98 1.29 4.62 -- -- -- -- -- 0.12 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 323.60 temperature 30 720 > th dose dependent rect. 18 1
15 328.58 humidity 50 1440 < th dose independent rect. 16 1
30 329.23 humidity 50 1440 < th dose dependent rect. 16 1
31 329.36 humidity 70 720 > th dose independent rect. 18 9
33 331.32 humidity 80 720 < th dose dependent rect. 18 3
34 331.48 humidity 70 720 < th dose independent rect. 19 12
35 331.65 humidity 70 720 < th dose independent rect. 19 1
59 333.26 humidity 70 720 < th dose dependent rect. 19 12
79 340.42 humidity 50 1440 > th dose independent rect. 16 1
113 344.06 temperature 30 720 > th dose independent rect. 18 1
144 348.60 humidity 70 1440 < th dose dependent rect. 15 5
157 348.73 temperature 25 720 > th dose dependent rect. 20 1
159 348.90 humidity 70 1440 < th dose dependent sin 12 NA
187 351.50 humidity 60 1440 < th dose independent sin 13 NA
190 351.75 humidity 60 1440 > th dose independent sin 13 NA
211 352.92 humidity 70 720 > th dose independent rect. 17 16
244 353.62 humidity 60 1440 < th dose independent rect. 14 6
260 353.79 humidity 70 1440 > th dose independent rect. 19 5
268 354.05 humidity 70 1440 > th dose independent rect. 19 12
333 354.58 humidity 60 1440 > th dose independent rect. 14 10
336 354.60 humidity 60 1440 > th dose independent rect. 14 8
338 354.60 humidity 60 1440 > th dose independent rect. 14 13
342 354.64 humidity 60 1440 > th dose independent rect. 14 6
350 354.68 humidity 60 1440 > th dose independent rect. 14 17
681 359.68 temperature 30 1440 < th dose independent rect. 18 8
744 360.44 temperature 30 1440 < th dose independent rect. 18 2
826 361.27 temperature 30 1440 < th dose independent rect. 18 14
850 361.64 humidity 60 720 > th dose dependent rect. 17 6
853 361.69 temperature 30 1440 < th dose independent rect. 18 5
857 361.71 humidity 70 720 > th dose dependent rect. 19 2
895 362.17 humidity 80 1440 < th dose dependent rect. 7 14
927 362.61 humidity 50 720 > th dose dependent rect. 17 8