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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0645000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, RING-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.93 (0.0269) R2 : 0.00086
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0355 (0.0567) R2dN8 : 0.00111 R2N8 : 0.00086
σ : 0.507
deviance : 117.95
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
106.75 0.485 2.87 -0.218 0.204 -1.35 0.444 -10.6 -0.00742 4.09 9.01 752 -- --
110.91 0.494 2.93 -0.113 0.207 0.873 0.333 -- -0.0391 3.99 9.01 752 -- --
107.31 0.482 2.87 -0.22 0.206 -1.33 -- -10.5 -0.00913 3.96 9.033 745 -- --
110.57 0.49 2.93 -0.104 0.209 0.952 -- -- -0.0262 4.09 9 745 -- --
109.63 0.488 2.88 -0.21 -- -1.28 -- -10.2 -0.00482 -- 9.016 751 -- --
114.5 0.502 2.94 -0.178 0.191 -- 0.466 -- -0.0575 4.13 -- -- -- --
115.03 0.502 2.94 -0.184 0.194 -- -- -- -0.0601 3.42 -- -- -- --
112.67 0.494 2.93 -0.0842 -- 0.955 -- -- -0.0177 -- 9.044 746 -- --
110.76 0.49 2.93 -- 0.196 1.01 -- -- -0.0106 4.18 9.076 745 -- --
117.14 0.506 2.94 -0.175 -- -- -- -- -0.055 -- -- -- -- --
115.92 0.504 2.93 -- 0.19 -- -- -- -0.0396 3.43 -- -- -- --
112.85 0.495 2.93 -- -- 0.996 -- -- -0.0071 -- 9.042 746 -- --
117.95 0.507 2.93 -- -- -- -- -- -0.0355 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 105.63 wind 1 720 > th dose dependent rect. 17 3
2 105.92 wind 1 720 > th dose dependent rect. 19 1
3 106.01 wind 9 720 < th dose independent rect. 13 19
4 106.07 humidity 90 30 < th dose dependent rect. 19 8
6 106.23 humidity 90 10 < th dose dependent rect. 19 10
9 106.26 humidity 90 10 < th dose dependent rect. 19 12
10 106.27 humidity 50 720 > th dose dependent rect. 20 5
12 106.30 wind 5 720 > th dose independent rect. 19 1
17 106.47 wind 9 270 > th dose dependent rect. 18 16
20 106.70 wind 9 720 > th dose independent rect. 16 19
22 106.73 wind 9 720 > th dose independent rect. 14 21
23 106.74 wind 9 720 < th dose independent rect. 11 22
26 106.80 wind 9 720 > th dose independent rect. 11 23
27 106.81 wind 7 720 > th dose dependent rect. 16 19
28 106.83 wind 7 720 < th dose independent rect. 4 13
30 106.85 wind 9 270 > th dose independent rect. 18 16
33 106.88 wind 5 270 > th dose dependent rect. 17 17
34 106.90 humidity 80 270 > th dose independent rect. 19 13
35 106.93 wind 9 720 > th dose independent sin 19 NA
38 106.97 wind 9 720 > th dose independent rect. 16 23
43 107.01 wind 9 720 > th dose independent rect. 11 9
48 107.03 wind 9 720 > th dose independent rect. 9 11
113 107.08 wind 9 720 > th dose independent no NA NA
176 107.09 wind 9 720 < th dose independent rect. 20 23
177 107.09 humidity 50 270 > th dose dependent rect. 20 12
178 107.10 wind 5 720 > th dose dependent rect. 17 3
184 107.13 humidity 80 90 < th dose independent rect. 19 2
188 107.15 wind 5 270 > th dose independent rect. 17 8
189 107.15 wind 9 720 < th dose independent rect. 5 18
212 107.22 wind 9 720 > th dose independent rect. 18 2
221 107.27 wind 9 270 > th dose independent rect. 18 5
225 107.27 wind 5 270 > th dose dependent rect. 18 7
227 107.28 wind 1 270 > th dose dependent rect. 16 19
228 107.29 wind 9 720 < th dose independent no NA NA
230 107.29 humidity 80 270 < th dose independent rect. 17 16
231 107.29 wind 9 720 < th dose independent rect. 20 21
232 107.29 wind 7 720 > th dose dependent rect. 16 22
236 107.31 wind 9 720 > th dose dependent rect. 14 21
239 107.33 humidity 80 10 < th dose dependent rect. 20 1
263 107.42 humidity 80 10 < th dose independent rect. 20 1
279 107.45 wind 7 720 < th dose independent rect. 12 5
284 107.47 wind 9 720 > th dose dependent rect. 16 1
307 107.50 wind 1 270 > th dose dependent rect. 16 21
309 107.51 wind 9 720 > th dose independent rect. 16 4
328 107.55 wind 9 720 > th dose independent rect. 16 1
336 107.57 wind 9 720 < th dose independent sin 17 NA
345 107.60 wind 9 720 > th dose independent rect. 14 6
365 107.64 wind 9 720 < th dose independent rect. 14 9
402 107.71 wind 9 720 > th dose independent sin 11 NA
409 107.72 humidity 80 720 < th dose independent rect. 19 1
418 107.74 wind 9 720 < th dose independent sin 19 NA
431 107.75 wind 9 720 > th dose dependent rect. 9 11
480 107.78 wind 9 720 > th dose dependent sin 21 NA
523 107.82 wind 7 270 > th dose dependent sin 11 NA
524 107.82 wind 9 720 > th dose dependent no NA NA
601 107.85 humidity 80 30 < th dose independent rect. 19 11
604 107.85 wind 9 720 < th dose independent rect. 11 14
615 107.86 humidity 80 270 < th dose independent sin 11 NA
658 107.88 wind 3 30 > th dose dependent rect. 19 7
673 107.90 humidity 80 30 < th dose independent rect. 19 9
716 107.94 wind 9 720 < th dose dependent rect. 3 21
765 107.97 humidity 80 30 < th dose independent rect. 19 7
798 107.99 wind 7 270 < th dose independent rect. 20 12
821 108.01 wind 9 720 < th dose independent sin 11 NA
947 108.13 wind 9 720 > th dose dependent rect. 18 23