Os02g0643500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Pentapeptide repeat containing protein.
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Os02g0643500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Pentapeptide repeat containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29.7 | 0.256 | 14.3 | 0.0696 | 1.04 | -0.498 | 0.32 | 0.379 | -0.18 | 12.7 | 19.7 | 1614 | -- | -- |
| 30.02 | 0.255 | 14.3 | 0.0717 | 1.04 | -0.581 | 0.363 | -- | -0.17 | 12.8 | 19.3 | 1620 | -- | -- |
| 29.93 | 0.255 | 14.3 | 0.0829 | 1.05 | -0.548 | -- | 0.382 | -0.193 | 12.7 | 19.2 | 1627 | -- | -- |
| 30.08 | 0.255 | 14.3 | 0.0417 | 1.04 | -0.641 | -- | -- | -0.206 | 12.8 | 19.1 | 1631 | -- | -- |
| 89.52 | 0.441 | 14.3 | 0.16 | -- | -0.666 | -- | 0.607 | -0.123 | -- | 24.9 | 2406 | -- | -- |
| 35.17 | 0.278 | 14.3 | -0.203 | 1.04 | -- | 0.357 | -- | -0.295 | 12.7 | -- | -- | -- | -- |
| 35.72 | 0.28 | 14.3 | -0.19 | 1.04 | -- | -- | -- | -0.293 | 12.7 | -- | -- | -- | -- |
| 89.69 | 0.441 | 14.3 | 0.0575 | -- | -0.747 | -- | -- | -0.0639 | -- | 24.98 | 2406 | -- | -- |
| 30.1 | 0.256 | 14.3 | -- | 1.04 | -0.641 | -- | -- | -0.203 | 12.7 | 19 | 1631 | -- | -- |
| 103.59 | 0.476 | 14.3 | -0.227 | -- | -- | -- | -- | -0.312 | -- | -- | -- | -- | -- |
| 36.66 | 0.283 | 14.3 | -- | 1.04 | -- | -- | -- | -0.272 | 12.7 | -- | -- | -- | -- |
| 81.3 | 0.42 | 14.2 | -- | -- | -0.759 | -- | -- | 0.0308 | -- | 24.9 | 953 | -- | -- |
| 104.95 | 0.478 | 14.3 | -- | -- | -- | -- | -- | -0.287 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 26.71 | temperature | 25 | 270 | < th | dose dependent | rect. | 15 | 10 |
| 5 | 26.86 | temperature | 25 | 90 | < th | dose dependent | sin | 14 | NA |
| 6 | 26.88 | temperature | 20 | 90 | < th | dose independent | sin | 14 | NA |
| 15 | 26.96 | temperature | 20 | 10 | < th | dose independent | sin | 13 | NA |
| 25 | 27.04 | temperature | 25 | 10 | < th | dose dependent | sin | 14 | NA |
| 40 | 27.19 | temperature | 20 | 90 | < th | dose independent | rect. | 15 | 14 |
| 42 | 27.23 | temperature | 20 | 90 | > th | dose independent | sin | 12 | NA |
| 45 | 27.25 | temperature | 20 | 90 | < th | dose independent | rect. | 15 | 12 |
| 46 | 27.25 | temperature | 20 | 90 | < th | dose independent | rect. | 17 | 12 |
| 54 | 27.28 | temperature | 20 | 10 | < th | dose independent | rect. | 16 | 12 |
| 58 | 27.29 | temperature | 20 | 90 | < th | dose independent | rect. | 17 | 10 |
| 59 | 27.29 | temperature | 20 | 10 | < th | dose independent | rect. | 14 | 14 |
| 115 | 27.47 | temperature | 25 | 10 | < th | dose dependent | rect. | 16 | 10 |
| 290 | 27.96 | temperature | 20 | 30 | > th | dose independent | rect. | 18 | 14 |
| 331 | 28.07 | temperature | 20 | 30 | > th | dose independent | rect. | 18 | 10 |
| 354 | 28.09 | temperature | 20 | 270 | > th | dose independent | rect. | 16 | 12 |
| 457 | 28.27 | temperature | 20 | 90 | < th | dose independent | rect. | 21 | 6 |
| 458 | 28.27 | temperature | 20 | 90 | < th | dose independent | rect. | 21 | 8 |
| 484 | 28.32 | temperature | 20 | 720 | > th | dose independent | rect. | 16 | 7 |
| 617 | 28.61 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 13 |
| 724 | 28.78 | temperature | 20 | 270 | < th | dose independent | rect. | 21 | 3 |
| 726 | 28.78 | temperature | 10 | 270 | > th | dose dependent | sin | 13 | NA |
| 821 | 28.88 | temperature | 20 | 270 | < th | dose independent | rect. | 23 | 1 |
| 880 | 28.93 | temperature | 10 | 10 | > th | dose dependent | sin | 11 | NA |