Os02g0642700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF821, CAP10-like family protein.
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Os02g0642700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF821, CAP10-like family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 63.24 | 0.374 | 8.68 | -0.121 | 1.94 | -0.127 | -0.867 | 3.27 | -0.0262 | 7.32 | 18.82 | 3863 | -- | -- |
| 72.14 | 0.396 | 8.8 | -0.871 | 1.95 | -0.19 | -0.937 | -- | -0.22 | 7.31 | 10.64 | 23972 | -- | -- |
| 65.01 | 0.376 | 8.68 | -0.141 | 1.94 | -0.109 | -- | 3.35 | -0.0245 | 7.36 | 18 | 3656 | -- | -- |
| 74.28 | 0.401 | 8.79 | -0.888 | 1.97 | -0.218 | -- | -- | -0.225 | 7.36 | 10.37 | 10306 | -- | -- |
| 261.47 | 0.753 | 8.69 | 0.108 | -- | -0.558 | -- | 5.12 | 0.0358 | -- | 24.7 | 3509 | -- | -- |
| 72.81 | 0.4 | 8.81 | -1.04 | 1.95 | -- | -0.933 | -- | -0.29 | 7.32 | -- | -- | -- | -- |
| 75.14 | 0.406 | 8.81 | -1.06 | 1.95 | -- | -- | -- | -0.287 | 7.36 | -- | -- | -- | -- |
| 272.58 | 0.772 | 8.85 | -0.974 | -- | -0.405 | -- | -- | -0.222 | -- | 24.7 | 3509 | -- | -- |
| 80.72 | 0.418 | 8.73 | -- | 1.94 | -0.792 | -- | -- | 0.065 | 7.33 | 4.615 | 46359 | -- | -- |
| 276.61 | 0.777 | 8.86 | -1.03 | -- | -- | -- | -- | -0.255 | -- | -- | -- | -- | -- |
| 104.83 | 0.479 | 8.79 | -- | 1.94 | -- | -- | -- | -0.169 | 7.4 | -- | -- | -- | -- |
| 281.61 | 0.782 | 8.78 | -- | -- | -0.77 | -- | -- | 0.0894 | -- | 4.589 | 47520 | -- | -- |
| 304.54 | 0.815 | 8.83 | -- | -- | -- | -- | -- | -0.141 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 60.35 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 2 | 60.95 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 5 |
| 3 | 61.27 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 7 |
| 4 | 61.27 | temperature | 20 | 270 | > th | dose independent | rect. | 20 | 21 |
| 7 | 61.37 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 19 |
| 14 | 61.87 | wind | 1 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 19 | 62.05 | humidity | 50 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 21 | 62.07 | temperature | 20 | 10 | > th | dose independent | rect. | 22 | 20 |
| 25 | 62.17 | radiation | 10 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 26 | 62.20 | wind | 1 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 29 | 62.23 | temperature | 20 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 37 | 62.30 | temperature | 20 | 270 | > th | dose independent | rect. | 10 | 17 |
| 39 | 62.34 | wind | 9 | 43200 | > th | dose independent | rect. | 16 | 2 |
| 42 | 62.45 | humidity | 50 | 43200 | < th | dose independent | rect. | 6 | 3 |
| 44 | 62.45 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 22 |
| 51 | 62.49 | radiation | 40 | 1440 | < th | dose dependent | rect. | 12 | 1 |
| 52 | 62.51 | wind | 7 | 43200 | > th | dose independent | rect. | 18 | 12 |
| 56 | 62.54 | wind | 7 | 43200 | > th | dose independent | rect. | 18 | 15 |
| 67 | 62.56 | wind | 1 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 69 | 62.58 | radiation | 20 | 4320 | < th | dose independent | rect. | 17 | 2 |
| 77 | 62.66 | wind | 7 | 43200 | < th | dose independent | rect. | 18 | 15 |
| 81 | 62.70 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 24 | 18 |
| 82 | 62.70 | temperature | 15 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 84 | 62.71 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 85 | 62.71 | wind | 7 | 43200 | < th | dose independent | rect. | 18 | 12 |
| 89 | 62.73 | temperature | 20 | 4320 | > th | dose dependent | rect. | 16 | 5 |
| 94 | 62.76 | humidity | 50 | 43200 | > th | dose independent | rect. | 1 | 8 |
| 96 | 62.77 | radiation | 20 | 4320 | < th | dose independent | rect. | 17 | 12 |
| 97 | 62.77 | humidity | 50 | 43200 | < th | dose independent | rect. | 19 | 14 |
| 99 | 62.77 | temperature | 20 | 4320 | > th | dose dependent | rect. | 10 | 13 |
| 105 | 62.79 | temperature | 20 | 10 | > th | dose independent | rect. | 23 | 7 |
| 116 | 62.81 | wind | 7 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 124 | 62.83 | humidity | 50 | 43200 | > th | dose independent | rect. | 23 | 10 |
| 126 | 62.83 | temperature | 20 | 4320 | > th | dose dependent | rect. | 13 | 9 |
| 135 | 62.86 | temperature | 20 | 270 | < th | dose independent | rect. | 16 | 17 |
| 155 | 62.90 | temperature | 20 | 4320 | > th | dose dependent | sin | 19 | NA |
| 161 | 62.91 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 162 | 62.91 | temperature | 20 | 10 | < th | dose independent | rect. | 17 | 18 |
| 181 | 62.95 | humidity | 50 | 43200 | > th | dose independent | rect. | 6 | 2 |
| 183 | 62.95 | temperature | 20 | 10 | > th | dose independent | rect. | 13 | 15 |
| 231 | 63.02 | temperature | 30 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 253 | 63.06 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 260 | 63.07 | humidity | 70 | 43200 | > th | dose dependent | rect. | 20 | 2 |
| 264 | 63.08 | wind | 9 | 43200 | < th | dose independent | rect. | 16 | 2 |
| 267 | 63.09 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 5 |
| 277 | 63.10 | wind | 5 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 282 | 63.10 | humidity | 50 | 43200 | < th | dose dependent | rect. | 20 | 13 |
| 312 | 63.15 | wind | 1 | 43200 | > th | dose independent | rect. | 14 | 12 |
| 361 | 63.22 | wind | 5 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 362 | 63.22 | temperature | 20 | 4320 | > th | dose dependent | rect. | 10 | 4 |
| 391 | 63.26 | temperature | 20 | 10 | > th | dose independent | rect. | 24 | 4 |
| 400 | 63.27 | wind | 1 | 43200 | < th | dose independent | rect. | 14 | 12 |
| 406 | 63.29 | humidity | 80 | 4320 | < th | dose independent | rect. | 8 | 1 |
| 418 | 63.30 | humidity | 50 | 43200 | > th | dose independent | rect. | 19 | 14 |
| 423 | 63.30 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 6 |
| 426 | 63.31 | temperature | 20 | 270 | < th | dose independent | sin | 11 | NA |
| 482 | 63.34 | temperature | 20 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 512 | 63.36 | radiation | 40 | 4320 | < th | dose independent | rect. | 14 | 18 |
| 532 | 63.38 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 545 | 63.39 | temperature | 15 | 4320 | > th | dose independent | rect. | 2 | 3 |
| 556 | 63.40 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 21 | 7 |
| 559 | 63.40 | temperature | 20 | 10 | > th | dose dependent | sin | 14 | NA |
| 569 | 63.41 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 582 | 63.42 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 22 |
| 604 | 63.44 | temperature | 20 | 10 | > th | dose independent | rect. | 11 | 19 |
| 642 | 63.47 | humidity | 90 | 14400 | > th | dose independent | rect. | 23 | 10 |
| 667 | 63.49 | wind | 7 | 43200 | > th | dose independent | sin | 11 | NA |
| 700 | 63.51 | wind | 1 | 43200 | < th | dose dependent | rect. | 9 | 17 |
| 721 | 63.53 | humidity | 70 | 43200 | > th | dose dependent | rect. | 19 | 4 |
| 755 | 63.55 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 22 | 17 |
| 794 | 63.57 | wind | 7 | 43200 | < th | dose independent | sin | 11 | NA |
| 808 | 63.58 | temperature | 20 | 10 | < th | dose independent | rect. | 17 | 13 |
| 833 | 63.60 | wind | 7 | 43200 | > th | dose dependent | sin | 11 | NA |
| 909 | 63.64 | temperature | 20 | 4320 | > th | dose dependent | no | NA | NA |
| 927 | 63.65 | humidity | 80 | 4320 | < th | dose independent | rect. | 7 | 3 |
| 930 | 63.65 | humidity | 90 | 14400 | < th | dose independent | rect. | 23 | 8 |
| 945 | 63.65 | temperature | 15 | 4320 | > th | dose dependent | rect. | 17 | 21 |
| 973 | 63.66 | temperature | 20 | 4320 | > th | dose dependent | rect. | 20 | 23 |
| 998 | 63.68 | temperature | 20 | 10 | > th | dose independent | rect. | 9 | 21 |