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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0642600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.48 (0.031) R2 : 0.369
β1 : 1.82 (0.118) R2dD : 0.376 R2D : 0.275
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.01 (0.131) R2dE : 0.0982 R2E : -0.000724
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0508 (0.0691) R2dN8 : 0.00112 R2N8 : -0.0108
σ : 0.573
deviance : 151.47
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 16.74
memory length : 791
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
131.03 0.538 5.32 3.04 0.478 -0.78 0.205 4.34 0.369 10.3 20.92 1392 -- --
147.25 0.57 5.47 1.72 0.691 -0.933 -0.0314 -- 0.0116 11.8 13.49 8491 -- --
131.17 0.533 5.32 3.06 0.477 -0.781 -- 4.38 0.368 10.3 21.1 1395 -- --
147.26 0.569 5.47 1.72 0.691 -0.932 -- -- 0.0114 11.8 -8.635 8523 -- --
143.11 0.557 5.33 2.99 -- -0.971 -- 4.43 0.372 -- 21.1 1138 -- --
155.62 0.585 5.5 1.54 0.506 -- 0.0419 -- -0.119 10.6 -- -- -- --
155.62 0.584 5.5 1.54 0.505 -- -- -- -0.119 10.6 -- -- -- --
151.47 0.573 5.48 1.82 -- -1.01 -- -- 0.0508 -- 16.74 791 -- --
177.19 0.62 5.6 -- 0.508 1.05 -- -- -0.608 10.9 -106.6 47520 -- --
171.34 0.612 5.51 1.53 -- -- -- -- -0.122 -- -- -- -- --
218.27 0.691 5.54 -- 0.496 -- -- -- -0.291 10.4 -- -- -- --
193.74 0.648 5.62 -- -- 1.01 -- -- -0.594 -- -100.2 47520 -- --
233.28 0.713 5.55 -- -- -- -- -- -0.292 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 124.49 humidity 90 14400 > th dose independent rect. 21 8
5 124.76 radiation 1 14400 < th dose dependent rect. 4 1
6 124.83 radiation 1 14400 < th dose dependent rect. 2 3
10 125.19 humidity 90 14400 < th dose independent rect. 23 4
11 125.19 temperature 20 720 > th dose dependent rect. 17 16
19 125.70 humidity 90 14400 > th dose dependent rect. 24 1
20 125.75 radiation 1 14400 < th dose dependent rect. 18 12
24 125.90 radiation 1 14400 < th dose dependent rect. 18 1
25 125.90 radiation 1 14400 < th dose dependent rect. 18 4
29 125.91 radiation 1 14400 < th dose dependent rect. 18 9
33 125.93 radiation 1 14400 < th dose dependent rect. 20 10
38 125.95 radiation 1 14400 < th dose dependent rect. 24 6
48 126.04 humidity 90 14400 < th dose independent rect. 24 1
51 126.12 temperature 20 720 > th dose dependent sin 11 NA
52 126.21 wind 3 43200 > th dose independent rect. 13 1
56 126.39 radiation 1 14400 < th dose independent rect. 18 9
61 126.47 radiation 1 14400 < th dose independent rect. 18 5
63 126.50 radiation 1 14400 < th dose independent rect. 18 1
70 126.60 humidity 90 14400 > th dose dependent rect. 23 3
72 126.61 radiation 1 14400 < th dose independent rect. 18 12
73 126.65 wind 7 43200 < th dose dependent rect. 13 3
78 126.77 wind 7 43200 < th dose dependent rect. 14 1
82 126.85 wind 5 43200 < th dose independent rect. 14 2
83 126.85 wind 1 43200 > th dose dependent rect. 14 2
95 126.94 wind 1 43200 > th dose independent rect. 2 1
96 126.97 temperature 15 720 > th dose dependent rect. 1 2
120 127.18 radiation 1 4320 > th dose independent rect. 18 1
193 127.76 temperature 20 720 > th dose dependent rect. 22 5
215 127.90 humidity 90 14400 > th dose dependent rect. 21 8
229 127.94 humidity 90 43200 < th dose independent rect. 19 2
234 127.99 wind 1 43200 < th dose independent rect. 2 1
287 128.41 temperature 20 1440 > th dose dependent rect. 17 10
288 128.41 temperature 20 1440 > th dose dependent rect. 16 12
292 128.43 humidity 90 43200 > th dose independent rect. 5 2
305 128.49 humidity 90 43200 < th dose independent rect. 5 5
333 128.66 temperature 20 270 > th dose dependent rect. 23 10
340 128.69 humidity 90 43200 < th dose independent rect. 5 2
499 129.23 wind 1 43200 > th dose independent rect. 24 1
500 129.24 humidity 90 43200 > th dose independent rect. 5 5
513 129.25 humidity 90 43200 < th dose independent rect. 5 21
520 129.29 wind 1 43200 < th dose dependent rect. 11 1
529 129.31 humidity 90 43200 > th dose dependent rect. 4 8
566 129.43 humidity 90 43200 > th dose dependent rect. 5 4
601 129.51 temperature 20 1440 > th dose dependent rect. 20 3
607 129.53 humidity 80 43200 > th dose dependent rect. 18 2
612 129.55 wind 1 43200 < th dose dependent rect. 2 1
619 129.56 humidity 90 43200 > th dose dependent rect. 5 2
621 129.57 temperature 25 4320 < th dose independent rect. 17 1
624 129.58 temperature 25 4320 > th dose independent rect. 16 2
625 129.58 wind 1 43200 > th dose independent rect. 8 4
651 129.65 humidity 90 43200 > th dose independent rect. 4 8
669 129.70 atmosphere 1005 43200 < th dose independent rect. 19 1
670 129.70 wind 9 43200 > th dose dependent rect. 18 3
676 129.72 atmosphere 1005 43200 > th dose independent rect. 16 15
677 129.72 atmosphere 1005 43200 > th dose independent rect. 16 17
681 129.73 atmosphere 1005 43200 > th dose independent rect. 12 22
700 129.76 atmosphere 1005 43200 > th dose independent rect. 16 9
723 129.79 humidity 80 43200 > th dose independent rect. 17 1
724 129.79 atmosphere 1005 43200 > th dose independent rect. 12 1
741 129.81 atmosphere 1005 43200 > th dose independent sin 14 NA
746 129.81 atmosphere 1005 43200 > th dose independent rect. 3 21
772 129.83 atmosphere 1005 43200 > th dose independent rect. 19 23
776 129.84 atmosphere 1005 43200 < th dose independent rect. 16 7
783 129.84 atmosphere 1005 43200 > th dose independent rect. 16 22
803 129.86 atmosphere 1005 43200 > th dose independent no NA NA
805 129.86 atmosphere 1005 43200 < th dose independent rect. 16 9
815 129.86 atmosphere 1005 43200 > th dose independent rect. 8 22
858 129.88 atmosphere 1005 43200 > th dose independent rect. 23 23
870 129.89 atmosphere 1005 43200 < th dose independent rect. 16 12
871 129.89 atmosphere 1005 43200 > th dose independent rect. 12 13
892 129.90 humidity 90 43200 < th dose independent sin 3 NA
900 129.90 atmosphere 1005 43200 > th dose independent rect. 3 15
903 129.90 atmosphere 1005 43200 < th dose independent rect. 16 16
949 129.93 atmosphere 1005 43200 > th dose independent rect. 19 3
966 129.93 humidity 90 43200 > th dose dependent sin 2 NA
970 129.94 humidity 80 43200 < th dose independent rect. 17 1
971 129.94 radiation 10 43200 > th dose independent rect. 8 1