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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0640500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Concanavalin A-like lectin/glucanase, subgroup domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.84 (0.0145) R2 : 0.0308
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.116 (0.0306) R2dN8 : 0.0397 R2N8 : 0.0308
σ : 0.274
deviance : 34.4
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
33.49 0.272 2.82 0.156 0.0722 -0.0901 -0.0306 0.333 0.187 12.8 25.3 78 -- --
33.86 0.271 2.83 0.0796 0.0692 -0.0755 0.0847 -- 0.164 12.4 25.2 72 -- --
33.49 0.27 2.82 0.15 0.0719 -0.0883 -- 0.32 0.185 12.5 25.23 77 -- --
33.81 0.273 2.83 0.0553 0.0763 -0.0742 -- -- 0.152 12.2 25.6 65 -- --
33.76 0.271 2.82 0.15 -- -0.0679 -- 0.334 0.177 -- 25.3 77 -- --
34.12 0.274 2.84 0.0356 0.0556 -- 0.139 -- 0.12 8.77 -- -- -- --
34.18 0.274 2.84 0.0403 0.055 -- -- -- 0.121 8.96 -- -- -- --
34.11 0.273 2.83 0.0486 -- -0.0493 -- -- 0.141 -- 25.6 65 -- --
33.89 0.273 2.83 -- 0.0733 -0.07 -- -- 0.144 12 25.6 65 -- --
34.36 0.274 2.84 0.0403 -- -- -- -- 0.121 -- -- -- -- --
34.23 0.274 2.84 -- 0.055 -- -- -- 0.116 8.91 -- -- -- --
34.17 0.273 2.84 -- -- -0.0472 -- -- 0.135 -- 25.6 65 -- --
34.4 0.274 2.84 -- -- -- -- -- 0.116 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 30.34 temperature 25.0 30 > th dose independent rect. 4 1
4 30.55 temperature 25.0 90 > th dose dependent rect. 4 1
5 30.64 humidity 90.0 10 < th dose independent rect. 4 1
8 30.79 wind 1.0 30 > th dose dependent rect. 4 1
11 31.86 wind 1.0 30 > th dose independent rect. 4 1
12 32.13 temperature 30.0 90 > th dose dependent rect. 10 1
13 32.43 wind 9.0 10 > th dose independent rect. 18 1
16 32.43 wind 9.0 10 > th dose dependent rect. 18 1
64 32.51 radiation 30.0 30 < th dose dependent rect. 8 1
68 32.59 atmosphere 1005.0 30 > th dose independent rect. 8 1
69 32.59 radiation 20.0 30 < th dose independent rect. 8 1
70 32.59 humidity 60.0 30 > th dose dependent rect. 8 1
71 32.60 wind 1.0 30 > th dose independent rect. 8 1
73 32.60 wind 1.0 30 > th dose dependent rect. 8 1
75 32.61 temperature 30.0 90 > th dose independent rect. 10 1
76 32.61 atmosphere 995.0 30 > th dose dependent rect. 8 1
78 32.62 wind 5.0 30 < th dose independent rect. 8 1
81 32.62 temperature 10.0 30 > th dose independent rect. 8 1
84 32.62 temperature 30.0 30 < th dose independent rect. 8 1
85 32.62 humidity 50.0 30 > th dose independent rect. 8 1
88 32.62 atmosphere 995.0 30 > th dose independent rect. 8 1
90 32.62 atmosphere 1010.0 30 < th dose independent rect. 8 1
92 32.62 radiation 1.0 30 > th dose independent rect. 8 1
94 32.62 precipitation 0.1 30 < th dose independent rect. 8 1
95 32.62 temperature 10.0 30 > th dose independent rect. 9 23
97 32.62 precipitation 0.1 30 < th dose dependent rect. 8 1
98 32.63 temperature 10.0 30 > th dose dependent rect. 8 1
102 32.63 wind 7.0 10 > th dose dependent rect. 18 11
107 32.64 temperature 10.0 1440 > th dose independent rect. 9 1
110 32.64 atmosphere 995.0 1440 > th dose independent rect. 9 1
113 32.64 atmosphere 1015.0 1440 < th dose independent rect. 9 1
114 32.64 temperature 10.0 1440 > th dose independent rect. 10 23
117 32.64 wind 9.0 30 < th dose dependent rect. 8 1
129 32.67 humidity 80.0 30 < th dose independent rect. 8 1
199 32.70 humidity 90.0 30 < th dose dependent rect. 8 1
202 32.71 atmosphere 1015.0 30 < th dose dependent rect. 8 1
213 32.74 temperature 25.0 10 > th dose independent rect. 2 3
214 32.74 radiation 1.0 30 > th dose dependent rect. 8 1
224 32.77 temperature 30.0 30 < th dose dependent rect. 8 1
342 32.83 temperature 25.0 90 < th dose independent rect. 16 15
344 32.84 wind 9.0 10 > th dose independent sin 12 NA
362 32.89 atmosphere 1005.0 30 > th dose dependent rect. 4 1
366 32.92 wind 9.0 10 < th dose independent sin 12 NA
405 33.08 radiation 1.0 10 > th dose dependent rect. 18 1
429 33.09 wind 9.0 30 < th dose independent rect. 9 23
513 33.13 atmosphere 1005.0 270 > th dose dependent rect. 4 1
522 33.16 temperature 30.0 14400 > th dose dependent rect. 18 1
589 33.19 temperature 30.0 10 > th dose dependent rect. 11 1
594 33.21 atmosphere 1005.0 30 > th dose dependent rect. 4 5
595 33.22 temperature 30.0 14400 > th dose independent rect. 18 1
640 33.24 humidity 90.0 10 < th dose dependent rect. 4 1
642 33.24 humidity 80.0 10 < th dose dependent rect. 17 2
665 33.28 temperature 25.0 90 < th dose independent rect. 17 2
688 33.30 temperature 30.0 14400 < th dose independent rect. 5 4
690 33.30 temperature 25.0 270 > th dose independent rect. 17 16
691 33.30 wind 9.0 10 > th dose dependent sin 11 NA
696 33.31 humidity 80.0 10 < th dose independent rect. 17 1
702 33.31 temperature 25.0 10 > th dose independent rect. 4 5
714 33.31 temperature 30.0 14400 < th dose independent rect. 18 15
722 33.31 temperature 10.0 90 > th dose dependent rect. 19 8
729 33.32 temperature 25.0 270 > th dose independent sin 10 NA
731 33.32 temperature 30.0 14400 < th dose independent rect. 18 3
737 33.32 temperature 30.0 14400 > th dose dependent rect. 8 1
739 33.32 radiation 40.0 270 > th dose dependent rect. 14 1
771 33.33 temperature 30.0 14400 > th dose independent rect. 8 1
772 33.33 temperature 30.0 14400 < th dose independent rect. 18 1
796 33.33 atmosphere 1005.0 10 > th dose dependent rect. 4 3
850 33.35 temperature 25.0 270 > th dose independent rect. 17 20
852 33.35 wind 9.0 90 > th dose dependent sin 12 NA
860 33.35 temperature 10.0 10 > th dose dependent rect. 20 7
866 33.35 temperature 25.0 1440 > th dose dependent rect. 20 13
909 33.37 wind 1.0 30 > th dose independent rect. 4 15
912 33.37 temperature 25.0 14400 > th dose dependent rect. 4 1
921 33.37 radiation 1.0 30 < th dose dependent rect. 4 14
925 33.38 temperature 25.0 90 < th dose independent rect. 11 22
940 33.39 temperature 30.0 90 > th dose dependent sin 8 NA
945 33.40 radiation 1.0 10 > th dose independent rect. 18 1
976 33.40 temperature 25.0 90 > th dose independent rect. 5 22
978 33.40 temperature 25.0 270 > th dose dependent sin 11 NA