Os02g0638200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0638200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 219.4 | 0.696 | 5.23 | -0.612 | 1.67 | 1.38 | -1.15 | -1.47 | -0.304 | 1.13 | 19.07 | 802 | 3.28 | 5.2 |
| 216.78 | 0.686 | 5.2 | -0.347 | 1.64 | 1.39 | -0.807 | -- | -0.282 | 1.7 | 17.35 | 1001 | 3.24 | 4.98 |
| 218.91 | 0.689 | 5.21 | -0.32 | 1.58 | 1.24 | -- | -0.19 | -0.29 | 1.09 | 18.01 | 924 | 3.6 | 3.43 |
| 218.66 | 0.689 | 5.21 | -0.259 | 1.58 | 1.22 | -- | -- | -0.262 | 1.18 | 18.34 | 914 | 3.84 | 3.25 |
| 287.47 | 0.79 | 5.16 | -0.213 | -- | 1.34 | -- | 0.452 | -0.245 | -- | 11.09 | 3064 | 3.5 | 3.42 |
| 265.6 | 0.764 | 5.13 | -0.0468 | 0.905 | -- | -1.13 | -- | 0.064 | 1.27 | -- | -- | -- | -- |
| 270.66 | 0.77 | 5.12 | -0.00624 | 0.905 | -- | -- | -- | 0.0714 | 0.999 | -- | -- | -- | -- |
| 286.64 | 0.789 | 5.16 | -0.332 | -- | 1.4 | -- | -- | -0.205 | -- | 7.43 | 3058 | 3.5 | 3.55 |
| 220.59 | 0.692 | 5.2 | -- | 1.59 | 1.22 | -- | -- | -0.24 | 1.2 | 18.3 | 911 | 3.87 | 3.21 |
| 321.58 | 0.838 | 5.11 | 0.0277 | -- | -- | -- | -- | 0.0888 | -- | -- | -- | -- | -- |
| 270.66 | 0.77 | 5.12 | -- | 0.905 | -- | -- | -- | 0.0721 | 0.999 | -- | -- | -- | -- |
| 289.39 | 0.792 | 5.16 | -- | -- | 1.35 | -- | -- | -0.16 | -- | 6.652 | 3057 | 3.53 | 3.53 |
| 321.6 | 0.837 | 5.11 | -- | -- | -- | -- | -- | 0.0858 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 223.81 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 3 | 6 |
| 6 | 226.88 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 3 | 6 |
| 11 | 229.22 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 6 | 1 |
| 15 | 229.90 | temperature | 25.0 | 720 | < th | dose independent | rect. | 6 | 5 |
| 16 | 230.07 | temperature | 20.0 | 720 | > th | dose independent | rect. | 3 | 4 |
| 40 | 232.16 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 1 | 10 |
| 54 | 232.77 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 3 | 12 |
| 58 | 232.93 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 5 | 6 |
| 64 | 233.11 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 3 | 10 |
| 69 | 233.21 | radiation | 20.0 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 81 | 233.47 | temperature | 20.0 | 720 | < th | dose independent | rect. | 4 | 3 |
| 99 | 233.93 | temperature | 25.0 | 720 | < th | dose independent | rect. | 2 | 9 |
| 106 | 234.08 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 3 | 19 |
| 126 | 234.65 | temperature | 20.0 | 720 | > th | dose independent | rect. | 3 | 12 |
| 220 | 236.37 | wind | 9.0 | 10 | < th | dose independent | rect. | 3 | 23 |
| 231 | 236.51 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 243 | 236.79 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 16 | 12 |
| 246 | 236.82 | radiation | 20.0 | 10 | < th | dose independent | rect. | 3 | 23 |
| 257 | 236.95 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 18 | 10 |
| 267 | 237.04 | temperature | 30.0 | 720 | < th | dose dependent | sin | 5 | NA |
| 279 | 237.15 | wind | 1.0 | 10 | < th | dose dependent | rect. | 2 | 1 |
| 294 | 237.27 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 1 | 3 |
| 295 | 237.27 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 299 | 237.31 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 5 | 15 |
| 328 | 237.52 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 3 | 1 |
| 332 | 237.54 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 3 | 1 |
| 333 | 237.54 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 16 | 12 |
| 334 | 237.55 | temperature | 15.0 | 10 | > th | dose independent | rect. | 3 | 23 |
| 339 | 237.59 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 1 | 3 |
| 350 | 237.65 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 2 | 1 |
| 352 | 237.66 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 18 | 10 |
| 356 | 237.68 | temperature | 20.0 | 4320 | < th | dose independent | sin | 14 | NA |
| 364 | 237.71 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 21 | 7 |
| 366 | 237.72 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 368 | 237.74 | temperature | 30.0 | 90 | < th | dose independent | rect. | 9 | 8 |
| 369 | 237.74 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 2 | 1 |
| 370 | 237.75 | wind | 9.0 | 10 | < th | dose independent | rect. | 2 | 1 |
| 371 | 237.75 | temperature | 10.0 | 10 | > th | dose independent | rect. | 2 | 1 |
| 373 | 237.75 | temperature | 30.0 | 10 | < th | dose independent | rect. | 2 | 1 |
| 374 | 237.75 | humidity | 50.0 | 10 | > th | dose independent | rect. | 2 | 1 |
| 378 | 237.75 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 2 | 1 |
| 380 | 237.75 | radiation | 1.0 | 10 | < th | dose independent | rect. | 2 | 1 |
| 385 | 237.75 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 2 | 1 |
| 389 | 237.75 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 2 | 1 |
| 394 | 237.75 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 2 | 1 |
| 403 | 237.78 | wind | 9.0 | 10 | < th | dose dependent | rect. | 2 | 1 |
| 420 | 237.83 | wind | 5.0 | 10 | < th | dose independent | rect. | 2 | 1 |
| 435 | 237.89 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 2 | 1 |
| 447 | 237.96 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 448 | 237.96 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 2 | 1 |
| 449 | 237.97 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 454 | 237.99 | temperature | 20.0 | 720 | > th | dose dependent | sin | 5 | NA |
| 485 | 238.09 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 22 | 7 |
| 494 | 238.13 | wind | 1.0 | 10 | < th | dose independent | rect. | 2 | 1 |
| 509 | 238.16 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 516 | 238.18 | radiation | 20.0 | 90 | < th | dose independent | rect. | 3 | 9 |
| 563 | 238.26 | radiation | 20.0 | 10 | < th | dose independent | rect. | 3 | 9 |
| 568 | 238.27 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 582 | 238.30 | wind | 1.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 597 | 238.35 | temperature | 20.0 | 4320 | > th | dose independent | sin | 14 | NA |
| 701 | 238.71 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 743 | 238.87 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 799 | 239.09 | temperature | 20.0 | 4320 | < th | dose dependent | sin | 13 | NA |
| 879 | 239.39 | wind | 9.0 | 14400 | < th | dose independent | rect. | 6 | 4 |
| 899 | 239.48 | radiation | 10.0 | 270 | < th | dose independent | rect. | 3 | 6 |
| 907 | 239.51 | temperature | 30.0 | 90 | < th | dose independent | rect. | 9 | 18 |
| 928 | 239.56 | temperature | 15.0 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 959 | 239.68 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 986 | 239.79 | wind | 9.0 | 4320 | < th | dose independent | rect. | 3 | 1 |