Os02g0636300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : DEAD/DEAH box helicase, N-terminal domain containing protein.
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Os02g0636300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : DEAD/DEAH box helicase, N-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 105.78 | 0.483 | 10.4 | 0.986 | 2.44 | 1.41 | -0.286 | -0.262 | -0.224 | 18.5 | 25.6 | 14 | -- | -- |
| 105.81 | 0.479 | 10.4 | 1.01 | 2.44 | 1.39 | -0.289 | -- | -0.217 | 18.5 | 25.6 | 13 | -- | -- |
| 105.98 | 0.479 | 10.4 | 0.982 | 2.44 | 1.4 | -- | -0.362 | -0.227 | 18.5 | 25.6 | 13 | -- | -- |
| 106.03 | 0.48 | 10.4 | 1.02 | 2.44 | 1.37 | -- | -- | -0.218 | 18.5 | 25.59 | 13 | -- | -- |
| 287.26 | 0.789 | 10.4 | 0.647 | -- | 2.88 | -- | -0.369 | -0.492 | -- | 24.5 | 313 | -- | -- |
| 133.71 | 0.542 | 10.4 | 1.22 | 2.76 | -- | 0.218 | -- | -0.142 | 18 | -- | -- | -- | -- |
| 133.82 | 0.542 | 10.4 | 1.22 | 2.77 | -- | -- | -- | -0.141 | 18 | -- | -- | -- | -- |
| 287.97 | 0.79 | 10.4 | 0.669 | -- | 2.9 | -- | -- | -0.472 | -- | 24.4 | 315 | -- | -- |
| 132.49 | 0.536 | 10.4 | -- | 2.35 | 1.64 | -- | -- | -0.327 | 18.7 | 25.5 | 19 | -- | -- |
| 530.35 | 1.08 | 10.3 | 1.14 | -- | -- | -- | -- | -0.204 | -- | -- | -- | -- | -- |
| 173.16 | 0.616 | 10.4 | -- | 2.75 | -- | -- | -- | -0.277 | 18 | -- | -- | -- | -- |
| 299.42 | 0.806 | 10.4 | -- | -- | 3 | -- | -- | -0.565 | -- | 24.3 | 316 | -- | -- |
| 564.63 | 1.11 | 10.4 | -- | -- | -- | -- | -- | -0.33 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 96.71 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 16 |
| 3 | 97.29 | temperature | 30 | 90 | < th | dose dependent | rect. | 4 | 18 |
| 5 | 97.72 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 10 |
| 15 | 98.85 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 12 |
| 37 | 100.33 | temperature | 20 | 90 | > th | dose dependent | sin | 1 | NA |
| 65 | 101.58 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 19 |
| 73 | 101.83 | temperature | 30 | 270 | < th | dose independent | rect. | 2 | 18 |
| 87 | 102.25 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 14 |
| 109 | 102.65 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 17 |
| 113 | 102.69 | temperature | 30 | 90 | < th | dose independent | rect. | 4 | 19 |
| 114 | 102.69 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 173 | 103.66 | temperature | 30 | 90 | < th | dose dependent | sin | 0 | NA |
| 288 | 104.86 | temperature | 25 | 270 | < th | dose independent | rect. | 2 | 11 |
| 332 | 105.19 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 4 |
| 355 | 105.33 | temperature | 25 | 30 | > th | dose dependent | rect. | 23 | 21 |
| 370 | 105.45 | temperature | 25 | 10 | > th | dose dependent | rect. | 4 | 16 |
| 373 | 105.46 | temperature | 25 | 90 | > th | dose independent | rect. | 8 | 10 |
| 391 | 105.56 | temperature | 20 | 720 | > th | dose dependent | rect. | 8 | 1 |
| 430 | 105.84 | temperature | 25 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 544 | 106.41 | temperature | 25 | 270 | > th | dose independent | rect. | 7 | 8 |
| 570 | 106.54 | temperature | 25 | 10 | > th | dose dependent | rect. | 4 | 21 |
| 594 | 106.63 | temperature | 25 | 10 | > th | dose dependent | no | NA | NA |
| 733 | 107.28 | temperature | 25 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 764 | 107.39 | temperature | 25 | 270 | > th | dose independent | sin | 3 | NA |
| 811 | 107.66 | temperature | 25 | 90 | > th | dose dependent | rect. | 16 | 23 |
| 854 | 107.92 | temperature | 25 | 270 | < th | dose independent | sin | 3 | NA |
| 880 | 108.08 | temperature | 25 | 720 | > th | dose independent | rect. | 8 | 1 |
| 930 | 108.42 | temperature | 25 | 270 | > th | dose dependent | rect. | 23 | 16 |
| 953 | 108.53 | temperature | 25 | 10 | > th | dose dependent | rect. | 16 | 23 |
| 974 | 108.65 | temperature | 30 | 270 | < th | dose independent | rect. | 16 | 15 |