Os02g0635600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase domain containing protein.
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Os02g0635600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 62.93 | 0.373 | 9.15 | 0.348 | 0.555 | 0.784 | 0.317 | 0.47 | -0.0875 | 7.7 | 69.59 | 1311 | -- | -- |
| 63.39 | 0.371 | 9.16 | 0.281 | 0.554 | 0.814 | 0.306 | -- | -0.104 | 7.72 | 69.91 | 1307 | -- | -- |
| 63.22 | 0.37 | 9.16 | 0.351 | 0.555 | 0.786 | -- | 0.451 | -0.0889 | 7.76 | 69.63 | 1311 | -- | -- |
| 63.64 | 0.372 | 9.17 | 0.287 | 0.554 | 0.817 | -- | -- | -0.107 | 7.77 | 70 | 1307 | -- | -- |
| 79.04 | 0.414 | 9.17 | 0.364 | -- | 0.79 | -- | 0.41 | -0.0877 | -- | 69 | 1371 | -- | -- |
| 88.14 | 0.44 | 9.15 | 0.463 | 0.571 | -- | 0.405 | -- | -0.0387 | 6.75 | -- | -- | -- | -- |
| 88.54 | 0.441 | 9.15 | 0.47 | 0.572 | -- | -- | -- | -0.0395 | 6.86 | -- | -- | -- | -- |
| 79.37 | 0.415 | 9.18 | 0.308 | -- | 0.807 | -- | -- | -0.0919 | -- | 69.78 | 1371 | -- | -- |
| 65.82 | 0.378 | 9.16 | -- | 0.553 | 0.856 | -- | -- | -0.133 | 7.66 | 70 | 1311 | -- | -- |
| 105.69 | 0.48 | 9.16 | 0.482 | -- | -- | -- | -- | -0.0286 | -- | -- | -- | -- | -- |
| 94.37 | 0.454 | 9.16 | -- | 0.578 | -- | -- | -- | -0.0919 | 6.81 | -- | -- | -- | -- |
| 81.6 | 0.421 | 9.19 | -- | -- | 0.857 | -- | -- | -0.134 | -- | 69.99 | 1371 | -- | -- |
| 111.83 | 0.494 | 9.17 | -- | -- | -- | -- | -- | -0.0821 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 58.89 | wind | 5 | 43200 | < th | dose dependent | rect. | 1 | 3 |
| 3 | 59.33 | temperature | 25 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 15 | 59.64 | temperature | 30 | 14400 | < th | dose independent | rect. | 11 | 4 |
| 18 | 59.66 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 24 | 59.76 | temperature | 30 | 14400 | > th | dose independent | rect. | 11 | 4 |
| 34 | 59.83 | wind | 3 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 41 | 59.89 | temperature | 10 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 60 | 59.96 | temperature | 25 | 14400 | > th | dose dependent | rect. | 23 | 16 |
| 62 | 59.97 | temperature | 25 | 14400 | > th | dose independent | rect. | 24 | 13 |
| 99 | 60.07 | temperature | 30 | 14400 | < th | dose independent | rect. | 11 | 18 |
| 156 | 60.15 | wind | 1 | 43200 | > th | dose dependent | rect. | 2 | 5 |
| 202 | 60.21 | wind | 1 | 43200 | > th | dose dependent | rect. | 24 | 5 |
| 221 | 60.22 | temperature | 25 | 14400 | > th | dose dependent | sin | 1 | NA |
| 227 | 60.23 | wind | 3 | 43200 | < th | dose independent | rect. | 3 | 2 |
| 237 | 60.23 | wind | 1 | 43200 | > th | dose dependent | rect. | 24 | 7 |
| 248 | 60.25 | temperature | 25 | 14400 | < th | dose independent | rect. | 24 | 13 |
| 254 | 60.25 | temperature | 25 | 14400 | > th | dose dependent | rect. | 10 | 19 |
| 267 | 60.26 | temperature | 25 | 14400 | > th | dose dependent | rect. | 10 | 17 |
| 272 | 60.27 | wind | 3 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 330 | 60.32 | wind | 9 | 43200 | < th | dose dependent | rect. | 2 | 5 |
| 368 | 60.35 | temperature | 25 | 14400 | > th | dose independent | sin | 6 | NA |
| 470 | 60.43 | temperature | 30 | 14400 | < th | dose independent | sin | 18 | NA |
| 491 | 60.45 | temperature | 25 | 14400 | > th | dose dependent | no | NA | NA |
| 511 | 60.46 | temperature | 25 | 14400 | > th | dose dependent | rect. | 5 | 22 |
| 538 | 60.47 | temperature | 25 | 14400 | > th | dose dependent | rect. | 2 | 23 |
| 543 | 60.48 | temperature | 25 | 14400 | > th | dose independent | rect. | 2 | 7 |
| 570 | 60.50 | temperature | 30 | 14400 | > th | dose independent | sin | 18 | NA |
| 655 | 60.59 | temperature | 25 | 14400 | < th | dose independent | sin | 5 | NA |
| 692 | 60.62 | temperature | 25 | 14400 | < th | dose independent | rect. | 3 | 6 |
| 693 | 60.62 | temperature | 30 | 14400 | < th | dose independent | rect. | 3 | 14 |
| 807 | 60.70 | temperature | 25 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 830 | 60.73 | temperature | 30 | 14400 | < th | dose independent | no | NA | NA |